WormBase Tree Display for Gene: WBGene00003947

WBGene00003947 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: K08D12
  Identity: Version: 1
    Name: CGC_name: pbs-1 Person_evidence: WBPerson1551
      Sequence_name: K08D12.1
      Molecular_name: K08D12.1
        K08D12.1.1
        CE52932
      Other_name: CELE_K08D12.1 Accession_evidence: NDB BX284604
      Public_name: pbs-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pbs
    Allele (17)
    Strain: WBStrain00051284
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog: WBGene00071273 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00034334 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00145161 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00100434 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00130579 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00233928 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g11051 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g9916 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g8362 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12693 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g571 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16175 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15276 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g14396 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g12076 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g22874 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4325 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-pbs-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10590 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00166.g6100 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_12122 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016168 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12416 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g21698 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40030100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g9720 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243664 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00258718 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00265363 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00298186 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301403 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003538 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0010590 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-990415-216 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-990415-140 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-001208-1 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:9543 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:9546 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1346526 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:104880 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:3427 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:61881 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:2321312 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog (13)
    Structured_description: Concise_description: pbs-1 encodes a protease subunit with highest similarity to vertebrate proteasome subunit beta type 6 that affects fertility, embryonic viability, locomotion, and larval viability Paper_evidence: WBPaper00005654
            WBPaper00006395
          Curator_confirmed: WBPerson48
          Date_last_updated: 07 Jul 2004 00:00:00
      Automated_description: Predicted to enable endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome core complex, beta-subunit complex. Human ortholog(s) of this gene implicated in several diseases, including Huntington's disease; autoimmune disease (multiple); and carcinoma (multiple). Is an ortholog of human PSMB9 (proteasome 20S subunit beta 9). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model (13)
  Molecular_info: Corresponding_CDS: K08D12.1
    Corresponding_CDS_history: K08D12.1:wp268
    Corresponding_transcript: K08D12.1.1
    Other_sequence (98)
    Associated_feature: WBsf651652
      WBsf995509
      WBsf229780
  Experimental_info: RNAi_result: WBRNAi00095677 Inferred_automatically: RNAi_primary
      WBRNAi00025917 Inferred_automatically: RNAi_primary
      WBRNAi00008972 Inferred_automatically: RNAi_primary
      WBRNAi00050262 Inferred_automatically: RNAi_primary
      WBRNAi00022804 Inferred_automatically: RNAi_primary
      WBRNAi00064987 Inferred_automatically: RNAi_primary
      WBRNAi00076559 Inferred_automatically: RNAi_primary
      WBRNAi00085486 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024172
      Expr1031873
      Expr1153957
      Expr2014765
      Expr2032999
    Microarray_results (17)
    Expression_cluster (139)
    Interaction (114)
  Map_info: Map: IV Position: -16.1887 Error: 0.024851
    Positive: Positive_clone: K08D12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026640
    WBPaper00030965
    WBPaper00035228
    WBPaper00038491
    WBPaper00055090
    WBPaper00056008
    WBPaper00060396
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene