WormBase Tree Display for Gene: WBGene00003932
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| WBGene00003932 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T21D12 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pat-6 | Person_evidence | WBPerson1562 | |||||
| Sequence_name | T21D12.4 | ||||||||
| Molecular_name | T21D12.4 | ||||||||
| T21D12.4.1 | |||||||||
| CE18268 | |||||||||
| Other_name | CELE_T21D12.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | pat-6 | ||||||||
| DB_info | Database | AceView | gene | 4B16 | |||||
| WormQTL | gene | WBGene00003932 | |||||||
| WormFlux | gene | WBGene00003932 | |||||||
| NDB | locus_tag | CELE_T21D12.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003932|UniProtKB=O16785 | |||||||
| family | PTHR12114 | ||||||||
| NCBI | gene | 176848 | |||||||
| RefSeq | protein | NM_067490.6 | |||||||
| SwissProt | UniProtAcc | O16785 | |||||||
| TREEFAM | TREEFAM_ID | TF314025 | |||||||
| UniProt_GCRP | UniProtAcc | O16785 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pat | ||||||||
| Allele (34) | |||||||||
| Legacy_information | [Williams BD] Severe Pat phenotype. st570 weaker, some pharyngeal pumping. | ||||||||
| [C.elegansII] st561 : severe Pat phenotype. OA1:st570 (weaker, some pharyngeal pumping). [Williams and Waterston 1994; RW] | |||||||||
| Strain | WBStrain00033525 | ||||||||
| WBStrain00040329 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (35) | |||||||||
| Contained_in_operon | CEOP4012 | ||||||||
| Ortholog (41) | |||||||||
| Structured_description | Concise_description | pat-6 encodes the worm ortholog of alpha-parvin; it is required for muscle assembly and function, with mutations leading to embryonic lethality. | Paper_evidence | WBPaper00001894 | |||||
| WBPaper00012852 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable actin binding activity. Involved in several processes, including muscle cell cellular homeostasis; positive regulation of sarcomere organization; and striated muscle cell development. Located in M band; basal plasma membrane; and striated muscle dense body. Expressed in body wall musculature; gonad; non-striated muscle; and touch receptor neurons. Is an ortholog of human PARVA (parvin alpha). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T21D12.4 | |||||||
| Corresponding_transcript | T21D12.4.1 | ||||||||
| Other_sequence (72) | |||||||||
| Associated_feature | WBsf651612 | ||||||||
| WBsf667696 | |||||||||
| WBsf995114 | |||||||||
| WBsf1016528 | |||||||||
| WBsf229665 | |||||||||
| WBsf229666 | |||||||||
| Experimental_info | RNAi_result (32) | ||||||||
| Expr_pattern | Expr3571 | ||||||||
| Expr11963 | |||||||||
| Expr11964 | |||||||||
| Expr14520 | |||||||||
| Expr1027806 | |||||||||
| Expr1031865 | |||||||||
| Expr1157283 | |||||||||
| Expr2014753 | |||||||||
| Expr2032987 | |||||||||
| Drives_construct | WBCnstr00019330 | ||||||||
| WBCnstr00020008 | |||||||||
| WBCnstr00035788 | |||||||||
| Construct_product | WBCnstr00011495 | ||||||||
| WBCnstr00018610 | |||||||||
| WBCnstr00019330 | |||||||||
| WBCnstr00019334 | |||||||||
| WBCnstr00020008 | |||||||||
| WBCnstr00021694 | |||||||||
| WBCnstr00035788 | |||||||||
| Antibody | WBAntibody00000630 | ||||||||
| WBAntibody00002542 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (132) | |||||||||
| Interaction (55) | |||||||||
| WBProcess | WBbiopr:00000006 | ||||||||
| Map_info | Map | IV | Position | -26.7523 | Error | 0.018243 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | T21D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | 2_point | 7000 | |||||||
| Reference (34) | |||||||||
| Remark | Data extracted from Williams & Waterston 1994 | ||||||||
| Sequence connection from [Williams BD] | |||||||||
| Method | Gene |
