WormBase Tree Display for Gene: WBGene00003927
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| WBGene00003927 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CD4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pas-6 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | CD4.6 | ||||||||
| Molecular_name | CD4.6 | ||||||||
| CD4.6.1 | |||||||||
| CE16954 | |||||||||
| Other_name | CELE_CD4.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pas-6 | ||||||||
| DB_info | Database | AceView | gene | 5G64 | |||||
| WormQTL | gene | WBGene00003927 | |||||||
| WormFlux | gene | WBGene00003927 | |||||||
| NDB | locus_tag | CELE_CD4.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003927|UniProtKB=O44156 | |||||||
| family | PTHR11599 | ||||||||
| NCBI | gene | 178943 | |||||||
| RefSeq | protein | NM_072071.6 | |||||||
| SwissProt | UniProtAcc | O44156 | |||||||
| TREEFAM | TREEFAM_ID | TF106206 | |||||||
| UniProt_GCRP | UniProtAcc | O44156 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pas | ||||||||
| Allele (24) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (39) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | pas-6 encodes a type 1 alpha subunit of the 26S proteasome's 20S protease core particle (CP); PAS-6 is required for embryonic, larval, and germline development and by homology, is predicted to comprise the outer rings of the proteasome and to play a role in selective degradation of ubiquitinated proteins during development; in vitro, PAS-6 interacts with BRP-1, a glutamine/asparagine (Q/N)-rich domain-containing protein conserved amongst nematodes, and with other members of the proteasome. | Paper_evidence | WBPaper00004888 | |||||
| WBPaper00005553 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Is an ortholog of human PSMA1 (proteasome 20S subunit alpha 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | CD4.6 | |||||||
| Corresponding_transcript | CD4.6.1 | ||||||||
| Other_sequence (84) | |||||||||
| Associated_feature | WBsf652636 | ||||||||
| WBsf1000032 | |||||||||
| WBsf1000033 | |||||||||
| WBsf1019659 | |||||||||
| WBsf233702 | |||||||||
| Experimental_info | RNAi_result (23) | ||||||||
| Expr_pattern | Expr1028074 | ||||||||
| Expr1031860 | |||||||||
| Expr1147286 | |||||||||
| Expr2014745 | |||||||||
| Expr2032979 | |||||||||
| Drives_construct | WBCnstr00035791 | ||||||||
| Construct_product | WBCnstr00035791 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (138) | |||||||||
| Interaction (187) | |||||||||
| Map_info | Map | V | Position | -1.38993 | Error | 0.023845 | |||
| Positive | Positive_clone | CD4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5254 | |||||||
| 4462 | |||||||||
| 4505 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
