WormBase Tree Display for Gene: WBGene00003926

WBGene00003926 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F25H2
  Identity: Version: 2
    Name: CGC_name: pas-5 Person_evidence: WBPerson1551
      Sequence_name: F25H2.9
      Molecular_name: F25H2.9
        F25H2.9.1
        CE09654
      Other_name: syt-2 Paper_evidence: WBPaper00032104
        CELE_F25H2.9 Accession_evidence: NDB BX284601
      Public_name: pas-5
    DB_info: Database: AceView gene 1L143
        WormQTL gene WBGene00003926
        WormFlux gene WBGene00003926
        NDB locus_tag CELE_F25H2.9
        Panther gene CAEEL|WormBase=WBGene00003926|UniProtKB=Q95008
          family PTHR11599
        NCBI gene 172942
        RefSeq protein NM_060364.7
        SwissProt UniProtAcc Q95008
        TREEFAM TREEFAM_ID TF106211
        UniProt_GCRP UniProtAcc Q95008
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 09 Jan 2009 11:41:23 WBPerson2970 Name_change: Other_name: syt-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pas
    Allele (12)
    Strain: WBStrain00036234
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog (37)
    Paralog (13)
    Structured_description: Concise_description: pas-5 encodes a proteasome alpha-type five subunit of the core 20S proteasome subcomplex; loss of pas-5 activity via RNAi results in a variety of defects including embryonic and larval lethality, sterility, and abnormal locomotion; loss of pas-5 activity also results in activation of SKN-1, a transcription factor required in adult worms for the acute response to oxidative stress and maternally for embryonic development. Paper_evidence: WBPaper00004402
            WBPaper00006395
            WBPaper00024497
            WBPaper00025054
            WBPaper00030965
          Curator_confirmed: WBPerson1843
          Date_last_updated: 18 Jan 2008 00:00:00
      Automated_description: Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Expressed in body wall musculature; germ line; gonad; hypodermis; and vulva. Is an ortholog of human PSMA5 (proteasome 20S subunit alpha 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F25H2.9
    Corresponding_transcript: F25H2.9.1
    Other_sequence (108)
    Associated_feature: WBsf643695
      WBsf643696
      WBsf654826
      WBsf656880
      WBsf985038
      WBsf1010569
      WBsf218452
  Experimental_info: RNAi_result (36)
    Expr_pattern: Expr9677
      Expr1027785
      Expr1031859
      Expr1149459
      Expr2014744
      Expr2032978
    Drives_construct: WBCnstr00008738
      WBCnstr00014220
      WBCnstr00035792
    Construct_product: WBCnstr00035792
    Microarray_results (22)
    Expression_cluster (164)
    Interaction: WBInteraction000035077
      WBInteraction000035078
      WBInteraction000036570
      WBInteraction000038498
      WBInteraction000039922
      WBInteraction000039923
      WBInteraction000040587
      WBInteraction000040759
      WBInteraction000040760
      WBInteraction000040761
      WBInteraction000040762
      WBInteraction000040763
      WBInteraction000041617
      WBInteraction000041640
      WBInteraction000042073
      WBInteraction000043843
      WBInteraction000043844
      WBInteraction000044124
      WBInteraction000048726
      WBInteraction000049522
      WBInteraction000049538
      WBInteraction000050244
      WBInteraction000050781
      WBInteraction000050816
      WBInteraction000102292
      WBInteraction000102610
      WBInteraction000102962
      WBInteraction000103006
      WBInteraction000103491
      WBInteraction000103961
      WBInteraction000106948
      WBInteraction000107172
      WBInteraction000107257
      WBInteraction000107259
      WBInteraction000107319
      WBInteraction000109334
      WBInteraction000109753
      WBInteraction000111468
      WBInteraction000111469
      WBInteraction000111470
      WBInteraction000111471
      WBInteraction000111472
      WBInteraction000111473
      WBInteraction000111474
      WBInteraction000111475
      WBInteraction000111476
      WBInteraction000111477
      WBInteraction000111478
      WBInteraction000111544
      WBInteraction000111558
      WBInteraction000111569
      WBInteraction000111601
      WBInteraction000111622
      WBInteraction000111639
      WBInteraction000111648
      WBInteraction000111728
      WBInteraction000112129
      WBInteraction000114579
      WBInteraction000126949
      WBInteraction000126950
      WBInteraction000136730
      WBInteraction000144726
      WBInteraction000148965
      WBInteraction000148966
      WBInteraction000152347
      WBInteraction000154289
      WBInteraction000154290
      WBInteraction000154291
      WBInteraction000154292
      WBInteraction000160503
      WBInteraction000168331
      WBInteraction000181925
      WBInteraction000183925
      WBInteraction000185656
      WBInteraction000190076
      WBInteraction000191965
      WBInteraction000204345
      WBInteraction000218032
      WBInteraction000218033
      WBInteraction000221189
      WBInteraction000233889
      WBInteraction000235319
      WBInteraction000240044
      WBInteraction000257036
      WBInteraction000273630
      WBInteraction000276026
      WBInteraction000288632
      WBInteraction000290513
      WBInteraction000299197
      WBInteraction000309490
      WBInteraction000312561
      WBInteraction000315816
      WBInteraction000321728
      WBInteraction000330387
      WBInteraction000336451
      WBInteraction000345717
      WBInteraction000360990
      WBInteraction000395426
      WBInteraction000395441
      WBInteraction000397588
      WBInteraction000434985
      WBInteraction000443689
      WBInteraction000446433
      WBInteraction000446638
      WBInteraction000448419
      WBInteraction000464232
      WBInteraction000464851
      WBInteraction000467970
      WBInteraction000469607
      WBInteraction000519524
      WBInteraction000519563
      WBInteraction000519564
      WBInteraction000519565
      WBInteraction000519566
      WBInteraction000519567
      WBInteraction000519572
      WBInteraction000519577
      WBInteraction000519586
      WBInteraction000519611
      WBInteraction000519614
      WBInteraction000519801
      WBInteraction000520325
      WBInteraction000523257
      WBInteraction000523323
      WBInteraction000524934
      WBInteraction000542082
      WBInteraction000542541
      WBInteraction000543599
      WBInteraction000543603
      WBInteraction000543607
      WBInteraction000551102
      WBInteraction000551103
      WBInteraction000551104
      WBInteraction000551911
      WBInteraction000558660
      WBInteraction000560450
      WBInteraction000560451
      WBInteraction000560452
      WBInteraction000560453
      WBInteraction000560918
      WBInteraction000562046
      WBInteraction000563229
      WBInteraction000564119
      WBInteraction000565026
      WBInteraction000565753
      WBInteraction000566036
      WBInteraction000571106
      WBInteraction000572386
      WBInteraction000575802
      WBInteraction000576108
      WBInteraction000577664
      WBInteraction000580221
      WBInteraction000583070
      WBInteraction000586531
  Map_info: Map: I Position: 5.05517 Error: 0.00012
    Positive: Positive_clone: F25H2 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (16)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene