WormBase Tree Display for Gene: WBGene00003922
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| WBGene00003922 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C15H11 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pas-1 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | C15H11.7 | ||||||||
| Molecular_name | C15H11.7 | ||||||||
| C15H11.7.1 | |||||||||
| CE08184 | |||||||||
| Other_name | CELE_C15H11.7 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pas-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pas | ||||||||
| Allele (24) | |||||||||
| Strain | WBStrain00036322 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP5416 | ||||||||
| Ortholog (43) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | pas-1 encodes a type 6 alpha subunit of the 26S proteasome's 20S protease core particle (CP); PAS-1 is required for embryonic development and by homology, is predicted to comprise the outer rings of the proteasome and to play a role in selective degradation of ubiquitinated proteins during development; in vitro, PAS-1 interacts with VET-1, a coiled-coil domain-containing protein expressed in the early embryo and ATN-1, an alpha-actinin, in addition to other members of the proteasome. | Paper_evidence | WBPaper00004888 | |||||
| WBPaper00005553 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Human ortholog(s) of this gene implicated in myocardial infarction. Is an ortholog of human PSMA6 (proteasome 20S subunit alpha 6). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:5844 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9535) | ||||
| Molecular_info | Corresponding_CDS | C15H11.7 | |||||||
| Corresponding_transcript | C15H11.7.1 | ||||||||
| Other_sequence (117) | |||||||||
| Associated_feature | WBsf234945 | ||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr13736 | ||||||||
| Expr1021243 | |||||||||
| Expr1031855 | |||||||||
| Expr1144680 | |||||||||
| Expr2014740 | |||||||||
| Expr2032974 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction (254) | |||||||||
| Map_info | Map | V | Position | 6.30322 | Error | 0.000935 | |||
| Positive | Positive_clone | C15H11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026640 | ||||||||
| WBPaper00029221 | |||||||||
| WBPaper00031906 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056008 | |||||||||
| WBPaper00056554 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
