WormBase Tree Display for Gene: WBGene00003909
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| WBGene00003909 | SMap | S_parent | Sequence | F45B8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pag-3 | |||||||
| Sequence_name | F45B8.4 | ||||||||
| Molecular_name | F45B8.4 | ||||||||
| F45B8.4.1 | |||||||||
| CE24977 | |||||||||
| Other_name | CELE_F45B8.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | pag-3 | ||||||||
| DB_info | Database | AceView | gene | XP570 | |||||
| WormQTL | gene | WBGene00003909 | |||||||
| WormFlux | gene | WBGene00003909 | |||||||
| NDB | locus_tag | CELE_F45B8.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003909|UniProtKB=G5EDE1 | |||||||
| family | PTHR24390 | ||||||||
| NCBI | gene | 181588 | |||||||
| RefSeq | protein | NM_078079.6 | |||||||
| SwissProt | UniProtAcc | G5EDE1 | |||||||
| TREEFAM | TREEFAM_ID | TF317208 | |||||||
| UniProt_GCRP | UniProtAcc | G5EDE1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pag | ||||||||
| Allele (82) | |||||||||
| Legacy_information | [Aamodt EJ, Jia Y] ls20 causes misexpression of the mec-7 gene, mec-7lacZ and mec-4lacZ fusion genes in the BDU neurons. Also causes a reverse kinker uncoordinated phenotype, and occasional axonal guidance errors in the PLM and BDU neurons. NA1. | ||||||||
| [C.elegansII] ls20 : homozygotes exhibit misexpression of the mec-7 gene, mec-7lacZ and mec-4lacZ fusion genes in the BDU neurons. Also causes a reverse kinker uncoordinated phenotype, and occasional axonal guidance errors in the PLM and BDU neurons. NA1. [EA] | |||||||||
| [Aamodt EJ] predicted gene F45B8.4 | |||||||||
| Strain | WBStrain00027353 | ||||||||
| WBStrain00035715 | |||||||||
| WBStrain00006454 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (23) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00012639 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00017430 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00009937 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022762 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00015138 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00009508 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description (2) | |||||||||
| Disease_info | Experimental_model | DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00041098 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 05 Jun 2019 00:00:00 | ||||||||
| Models_disease_asserted | WBDOannot00000696 | ||||||||
| Molecular_info | Corresponding_CDS | F45B8.4 | |||||||
| Corresponding_transcript | F45B8.4.1 | ||||||||
| Other_sequence (19) | |||||||||
| Associated_feature (12) | |||||||||
| Transcription_factor | WBTranscriptionFactor000513 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00027820 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00047348 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr521 | ||||||||
| Expr1872 | |||||||||
| Expr1018152 | |||||||||
| Expr1031844 | |||||||||
| Expr1151201 | |||||||||
| Expr1200026 | |||||||||
| Expr2014684 | |||||||||
| Expr2032917 | |||||||||
| Drives_construct | WBCnstr00012418 | ||||||||
| WBCnstr00035802 | |||||||||
| Construct_product (4) | |||||||||
| Antibody | WBAntibody00000504 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (113) | |||||||||
| Interaction (51) | |||||||||
| WBProcess | WBbiopr:00000024 | ||||||||
| Map_info | Map | X | Position | 21.592 | Error | 0.004611 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | F45B8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Y37H4 | |||||||||
| Mapping_data | 2_point | 7015 | |||||||
| Multi_point | 4508 | ||||||||
| 5033 | |||||||||
| Pos_neg_data (11) | |||||||||
| Reference (51) | |||||||||
| Method | Gene |
