WormBase Tree Display for Gene: WBGene00003854
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| WBGene00003854 | SMap | S_parent | Sequence | T18D3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | odr-7 | Person_evidence | WBPerson42 | |||||
| Sequence_name | T18D3.2 | ||||||||
| Molecular_name | T18D3.2 | ||||||||
| T18D3.2.1 | |||||||||
| CE03663 | |||||||||
| Other_name | CELE_T18D3.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | odr-7 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | odr | ||||||||
| Allele (62) | |||||||||
| Legacy_information | [C.elegansII] ky4 : defective chemotaxis to some volatile odorants; nonsense mutant. OA1: ky55 (defective chemotaxis to diacetyl, other responses normal; missense). Cloned: encodes predicted protein with similarity to NHR DNA-binding domain; odr-7:GFP expressed only in AWA sensory neurons. [Sengupta et al. 1994, CX] | ||||||||
| [Sengupta P] ky4 (nonsense) homozygotes are defective in response to diacetyl, pyrazine, some other attractants, normal response to benzaldehyde, butanone, isoamyl alcohol -- similar phenotype to AWA kill. ky55 (missense) less defective. Cloned: encodes protein with similarity to nuclear hormone receptors. Predicted gene T18D3.2 | |||||||||
| Strain | WBStrain00031122 | ||||||||
| WBStrain00005213 | |||||||||
| WBStrain00055561 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (25) | |||||||||
| Ortholog (29) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Concise_description | odr-7 encodes an olfactory-specific member of the nuclear receptor superfamily that affects chemotaxis to some volatile odorants and the cell fate of the AWA olfactory neurons; ODR-7 is expressed in the AWA neurons; in specifying the identity of the AWA neurons, ODR-7 appears to lie upstream of odr-10, which encodes a seven transmembrane domain olfactory receptor that is required for the response to diacetyl, an odorant detected by the AWA neurons. | Paper_evidence | WBPaper00002090 | |||||
| WBPaper00002421 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 30 May 2006 00:00:00 | ||||||||
| Automated_description | Enables DNA-binding transcription activator activity, RNA polymerase II-specific. Involved in negative adaptation of signaling pathway; positive chemotaxis; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in AWAL and AWAR. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T18D3.2 | |||||||
| Corresponding_transcript | T18D3.2.1 | ||||||||
| Other_sequence | U16708 | ||||||||
| JI212760.1 | |||||||||
| Oden_isotig27838 | |||||||||
| Associated_feature | WBsf978602 | ||||||||
| WBsf238064 | |||||||||
| Transcription_factor | WBTranscriptionFactor001060 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00107364 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00018800 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027807 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053466 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr282 | ||||||||
| Expr1010531 | |||||||||
| Expr1157030 | |||||||||
| Expr2014611 | |||||||||
| Expr2032844 | |||||||||
| Drives_construct | WBCnstr00000819 | ||||||||
| WBCnstr00010970 | |||||||||
| WBCnstr00035828 | |||||||||
| Construct_product | WBCnstr00010970 | ||||||||
| WBCnstr00035828 | |||||||||
| Antibody | WBAntibody00000417 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (45) | |||||||||
| Interaction (152) | |||||||||
| Map_info | Map | X | Position | 7.10226 | Error | 0.006986 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | B0525 | |||||||
| F19H7 | |||||||||
| T18D3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Mapping_data | Multi_point | 3640 | |||||||
| 3641 | |||||||||
| 3642 | |||||||||
| 3643 | |||||||||
| Reference (85) | |||||||||
| Remark | Data extracted from Sengupta et al. (1994) | ||||||||
| Method | Gene |
