WormBase Tree Display for Gene: WBGene00003790
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| WBGene00003790 | SMap | S_parent | Sequence | Y54E5A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | npp-4 | Person_evidence | WBPerson1780 | |||||
| Sequence_name | Y54E5A.4 | ||||||||
| Molecular_name | Y54E5A.4 | ||||||||
| Y54E5A.4.1 | |||||||||
| CE20315 | |||||||||
| Other_name | CELE_Y54E5A.4 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | npp-4 | ||||||||
| DB_info | Database | AceView | gene | 1P294 | |||||
| WormQTL | gene | WBGene00003790 | |||||||
| WormFlux | gene | WBGene00003790 | |||||||
| NDB | locus_tag | CELE_Y54E5A.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003790|UniProtKB=Q9XWK3 | |||||||
| family | PTHR12084 | ||||||||
| NCBI | gene | 173329 | |||||||
| RefSeq | protein | NM_061151.6 | |||||||
| TREEFAM | TREEFAM_ID | TF318562 | |||||||
| TrEMBL | UniProtAcc | Q9XWK3 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XWK3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npp | ||||||||
| Allele (115) | |||||||||
| Strain | WBStrain00035744 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP1748 | ||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00003797 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable phospholipid binding activity. Predicted to be a structural constituent of nuclear pore. Involved in determination of adult lifespan; embryo development; and organelle organization. Predicted to be part of nuclear pore central transport channel. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54E5A.4 | |||||||
| Corresponding_transcript | Y54E5A.4.1 | ||||||||
| Other_sequence | CGC00086_1 | ||||||||
| CBC03832_1 | |||||||||
| JI180896.1 | |||||||||
| CR06186 | |||||||||
| MJ02142 | |||||||||
| CRC05749_1 | |||||||||
| Associated_feature | WBsf665151 | ||||||||
| WBsf220638 | |||||||||
| WBsf220639 | |||||||||
| WBsf220640 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Chronogram10 | ||||||||
| Expr7043 | |||||||||
| Expr1025832 | |||||||||
| Expr1031776 | |||||||||
| Expr1160817 | |||||||||
| Expr2014389 | |||||||||
| Expr2032630 | |||||||||
| Drives_construct | WBCnstr00003703 | ||||||||
| Construct_product | WBCnstr00008123 | ||||||||
| WBCnstr00008124 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (104) | |||||||||
| Interaction (52) | |||||||||
| Map_info | Map | I | Position | 26.3395 | Error | 0.059425 | |||
| Positive | Positive_clone | Y54E5A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4409 | |||||||
| 4544 | |||||||||
| 5057 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Sequence connection from [Askjaer P, Mattaj IW]. krb 13/11/01 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
