WormBase Tree Display for Gene: WBGene00003790

WBGene00003790 SMap: S_parent: Sequence: Y54E5A
  Identity: Version: 1
    Name: CGC_name: npp-4 Person_evidence: WBPerson1780
      Sequence_name: Y54E5A.4
      Molecular_name: Y54E5A.4
        Y54E5A.4.1
        CE20315
      Other_name: CELE_Y54E5A.4 Accession_evidence: NDB BX284601
      Public_name: npp-4
    DB_info: Database: AceView gene 1P294
        WormQTL gene WBGene00003790
        WormFlux gene WBGene00003790
        NDB locus_tag CELE_Y54E5A.4
        Panther gene CAEEL|WormBase=WBGene00003790|UniProtKB=Q9XWK3
          family PTHR12084
        NCBI gene 173329
        RefSeq protein NM_061151.6
        TREEFAM TREEFAM_ID TF318562
        TrEMBL UniProtAcc Q9XWK3
        UniProt_GCRP UniProtAcc Q9XWK3
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: npp
    Allele (115)
    Strain: WBStrain00035744
    RNASeq_FPKM (74)
    GO_annotation (15)
    Contained_in_operon: CEOP1748
    Ortholog (24)
    Paralog: WBGene00003797 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable phospholipid binding activity. Predicted to be a structural constituent of nuclear pore. Involved in determination of adult lifespan; embryo development; and organelle organization. Predicted to be part of nuclear pore central transport channel. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y54E5A.4
    Corresponding_transcript: Y54E5A.4.1
    Other_sequence: CGC00086_1
      CBC03832_1
      JI180896.1
      CR06186
      MJ02142
      CRC05749_1
    Associated_feature: WBsf665151
      WBsf220638
      WBsf220639
      WBsf220640
  Experimental_info: RNAi_result (12)
    Expr_pattern: Chronogram10
      Expr7043
      Expr1025832
      Expr1031776
      Expr1160817
      Expr2014389
      Expr2032630
    Drives_construct: WBCnstr00003703
    Construct_product: WBCnstr00008123
      WBCnstr00008124
    Microarray_results (24)
    Expression_cluster (104)
    Interaction: WBInteraction000029106
      WBInteraction000109694
      WBInteraction000112657
      WBInteraction000113059
      WBInteraction000121916
      WBInteraction000124520
      WBInteraction000128622
      WBInteraction000128827
      WBInteraction000137854
      WBInteraction000141550
      WBInteraction000147466
      WBInteraction000147467
      WBInteraction000147469
      WBInteraction000147474
      WBInteraction000147477
      WBInteraction000147480
      WBInteraction000185492
      WBInteraction000185613
      WBInteraction000187130
      WBInteraction000187328
      WBInteraction000215895
      WBInteraction000255707
      WBInteraction000293216
      WBInteraction000316972
      WBInteraction000330378
      WBInteraction000346648
      WBInteraction000379452
      WBInteraction000382733
      WBInteraction000416842
      WBInteraction000470615
      WBInteraction000471386
      WBInteraction000514698
      WBInteraction000514704
      WBInteraction000523006
      WBInteraction000523007
      WBInteraction000523008
      WBInteraction000523009
      WBInteraction000523010
      WBInteraction000523011
      WBInteraction000523012
      WBInteraction000523013
      WBInteraction000523014
      WBInteraction000523015
      WBInteraction000523016
      WBInteraction000523264
      WBInteraction000555838
      WBInteraction000555841
      WBInteraction000556028
      WBInteraction000577172
      WBInteraction000582816
      WBInteraction000583694
      WBInteraction000584057
  Map_info: Map: I Position: 26.3395 Error: 0.059425
    Positive: Positive_clone: Y54E5A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4409
        4544
        5057
    Pseudo_map_position
  Reference (12)
  Remark: Sequence connection from [Askjaer P, Mattaj IW]. krb 13/11/01
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene