WormBase Tree Display for Gene: WBGene00003769
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| WBGene00003769 | SMap | S_parent | Sequence | B0213 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nlp-31 | Person_evidence | WBPerson242 | |||||
| Sequence_name | B0213.6 | ||||||||
| Molecular_name | B0213.6 | ||||||||
| B0213.6.1 | |||||||||
| CE16777 | |||||||||
| Other_name | CELE_B0213.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nlp-31 | ||||||||
| DB_info | Database | AceView | gene | 5E459 | |||||
| WormQTL | gene | WBGene00003769 | |||||||
| WormFlux | gene | WBGene00003769 | |||||||
| NDB | locus_tag | CELE_B0213.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003769|UniProtKB=O44662 | |||||||
| family | PTHR22552 | ||||||||
| NCBI | gene | 178804 | |||||||
| RefSeq | protein | NM_071706.6 | |||||||
| SwissProt | UniProtAcc | O44662 | |||||||
| UniProt_GCRP | UniProtAcc | O44662 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nlp | ||||||||
| Allele (22) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog | WBGene00045436 | Caenorhabditis remanei | From_analysis | OMA | |||||
| WBGene00100569 | Pristionchus pacificus | From_analysis | OMA | ||||||
| WBGene00119590 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| WBGene00123428 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| WBGene00100567 | Pristionchus pacificus | From_analysis | OMA | ||||||
| chrV_pilon.g13881 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | nlp-31 encodes five predicted neuropeptide-like proteins; in C. elegans, nlp-31 is part of the YGGWamide neuropeptide family that also contains nlp-24, nlp-25, and nlp-27-32; nlp-31 is expressed in the hypodermis, and its expression is also detected in precomma-stage embryos; nlp-31 expression is upregulated in response to fungal infection and, when synthesized in vitro, demonstrates antifungal activity. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00004975 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00006488 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 22 Mar 2013 00:00:00 | ||||||||
| Automated_description | Enables double-stranded DNA binding activity. Involved in defense response to Gram-negative bacterium; defense response to fungus; and killing of cells of another organism. Predicted to be located in extracellular region. Expressed in hypodermis. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0213.6 | |||||||
| Corresponding_transcript | B0213.6.1 | ||||||||
| Other_sequence | JI463222.1 | ||||||||
| GW412432.1 | |||||||||
| CJC02775_1 | |||||||||
| Associated_feature | WBsf646732 | ||||||||
| WBsf999717 | |||||||||
| WBsf1019449 | |||||||||
| WBsf231620 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00009587 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038739 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007260 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095237 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027995 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1696 | ||||||||
| Expr8213 | |||||||||
| Expr1031760 | |||||||||
| Expr1142950 | |||||||||
| Expr2014296 | |||||||||
| Expr2032537 | |||||||||
| Drives_construct | WBCnstr00000499 | ||||||||
| WBCnstr00010387 | |||||||||
| WBCnstr00013186 | |||||||||
| WBCnstr00035879 | |||||||||
| Construct_product | WBCnstr00000499 | ||||||||
| WBCnstr00035879 | |||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (278) | |||||||||
| Interaction (18) | |||||||||
| WBProcess | WBbiopr:00000039 | ||||||||
| Map_info | Map | V | Position | -7.34512 | Error | 0.001542 | |||
| Positive | Positive_clone | B0213 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (23) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
