WormBase Tree Display for Gene: WBGene00003768
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| WBGene00003768 | SMap | S_parent | Sequence | B0213 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nlp-30 | Person_evidence | WBPerson242 | |||||
| Sequence_name | B0213.5 | ||||||||
| Molecular_name | B0213.5 | ||||||||
| B0213.5.1 | |||||||||
| CE16776 | |||||||||
| Other_name | CELE_B0213.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nlp-30 | ||||||||
| DB_info | Database | AceView | gene | 5E461 | |||||
| WormQTL | gene | WBGene00003768 | |||||||
| WormFlux | gene | WBGene00003768 | |||||||
| NDB | locus_tag | CELE_B0213.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003768|UniProtKB=O44663 | |||||||
| family | PTHR22552 | ||||||||
| NCBI | gene | 3565444 | |||||||
| RefSeq | protein | NM_071707.4 | |||||||
| SwissProt | UniProtAcc | O44663 | |||||||
| UniProt_GCRP | UniProtAcc | O44663 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nlp | ||||||||
| Allele (26) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00033115 | ||||||||
| 00033116 | |||||||||
| 00033117 | |||||||||
| Ortholog | WBGene00045436 | Caenorhabditis remanei | From_analysis | OMA | |||||
| WBGene00100569 | Pristionchus pacificus | From_analysis | OMA | ||||||
| WBGene00119590 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| WBGene00121896 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| WBGene00123428 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| WBGene00181963 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| WBGene00133597 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| WBGene00138055 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| chrV_pilon.g13882 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | nlp-30 encodes five predicted neuropeptide-like proteins; in C. elegans, nlp-30 is part of the YGGWamide neuropeptide family that also contains nlp-24, nlp-25, and nlp-27-32; nlp-30 is expressed in the hypodermis, suggesting that the peptides it encodes may have a non-neuronal function; as loss of nlp-30 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of the nlp-30-encoded peptides in development and/or behavior is not yet known. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00004975 | |||||||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in neuropeptide signaling pathway. Predicted to be located in extracellular region. Expressed in hypodermis. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0213.5 | |||||||
| Corresponding_transcript | B0213.5.1 | ||||||||
| Other_sequence | TCC02149_1 | ||||||||
| CJC03892_1 | |||||||||
| TX01802 | |||||||||
| PPC12681_1 | |||||||||
| PPC01753_1 | |||||||||
| CJC09552_1 | |||||||||
| Associated_feature | WBsf661202 | ||||||||
| WBsf999718 | |||||||||
| WBsf1019450 | |||||||||
| WBsf231621 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00027994 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038738 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009586 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007253 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1695 | ||||||||
| Expr8212 | |||||||||
| Expr1142949 | |||||||||
| Expr2014295 | |||||||||
| Expr2032536 | |||||||||
| Drives_construct (12) | |||||||||
| Construct_product | WBCnstr00000499 | ||||||||
| WBCnstr00035880 | |||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (262) | |||||||||
| Interaction | WBInteraction000136561 | ||||||||
| WBInteraction000141781 | |||||||||
| WBInteraction000190627 | |||||||||
| WBInteraction000382206 | |||||||||
| WBInteraction000419747 | |||||||||
| WBInteraction000518416 | |||||||||
| WBInteraction000561538 | |||||||||
| Map_info | Map | V | Position | -7.3412 | Error | 0.001619 | |||
| Positive | Positive_clone | B0213 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004975 | ||||||||
| WBPaper00006488 | |||||||||
| WBPaper00032031 | |||||||||
| WBPaper00033777 | |||||||||
| WBPaper00050183 | |||||||||
| WBPaper00055020 | |||||||||
| WBPaper00060703 | |||||||||
| WBPaper00062715 | |||||||||
| WBPaper00063691 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
