WormBase Tree Display for Gene: WBGene00003767
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| WBGene00003767 | SMap | S_parent | Sequence | B0213 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nlp-29 | Person_evidence | WBPerson242 | |||||
| Sequence_name | B0213.4 | ||||||||
| Molecular_name | B0213.4 | ||||||||
| B0213.4.1 | |||||||||
| CE16775 | |||||||||
| Other_name | CELE_B0213.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nlp-29 | ||||||||
| DB_info | Database | AceView | gene | 5E461 | |||||
| WormQTL | gene | WBGene00003767 | |||||||
| WormFlux | gene | WBGene00003767 | |||||||
| NDB | locus_tag | CELE_B0213.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003767|UniProtKB=O44664 | |||||||
| family | PTHR22552 | ||||||||
| NCBI | gene | 178805 | |||||||
| RefSeq | protein | NM_071708.6 | |||||||
| SwissProt | UniProtAcc | O44664 | |||||||
| UniProt_GCRP | UniProtAcc | O44664 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nlp | ||||||||
| Allele (22) | |||||||||
| Strain | WBStrain00055182 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00033118 | ||||||||
| 00033119 | |||||||||
| 00033120 | |||||||||
| 00033121 | |||||||||
| 00033122 | |||||||||
| 00033123 | |||||||||
| 00033124 | |||||||||
| 00033125 | |||||||||
| 00105987 | |||||||||
| Ortholog | WBGene00045436 | Caenorhabditis remanei | From_analysis | OMA | |||||
| WBGene00100569 | Pristionchus pacificus | From_analysis | OMA | ||||||
| WBGene00119590 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| WBGene00121896 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| WBGene00123428 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| WBGene00181963 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| WBGene00138055 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| chrV_pilon.g13883 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | nlp-29 encodes an antimicrobial, neuropeptide-like protein; nlp-29 appears to play a role in innate immunity, as its expression in the epidermis is strongly induced following fungal infection; nlp-29 expression is also induced following physical injury and osmotic stress; nlp-29 expression following fungal infection or physical wounding is regulated by a TIR-1, (Toll-interleukin 1 receptor (TIR) domain protein)/NSY-1/SEK-1/PMK-1 p38 MAPK signaling pathway and the ELT-3 GATA transcription factor; nlp-29 expression in the epidermis is also regulated by the SNF-12 sodium-dependent neurotransmitter symporter acting in concert with the STA-2 STAT transcription factor; the RAB-1 GTPase and the product of R53.4, a mitochondrial ATP synthase subunit f homolog, also appear to play a role in nlp-29 regulation; several reports indicate that nlp-29 is expressed exclusively in the hypodermis, while one report additionally reported expression in the intestine. | Paper_evidence | WBPaper00004975 | |||||
| WBPaper00006488 | |||||||||
| WBPaper00030985 | |||||||||
| WBPaper00038438 | |||||||||
| WBPaper00029438 | |||||||||
| WBPaper00031666 | |||||||||
| WBPaper00032031 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 May 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable neuropeptide receptor binding activity. Predicted to be involved in defense response to other organism; killing of cells of another organism; and neuropeptide signaling pathway. Predicted to be located in extracellular space. Expressed in hyp7 syncytium; hypodermis; and intestine. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0213.4 | |||||||
| Corresponding_transcript | B0213.4.1 | ||||||||
| Other_sequence (31) | |||||||||
| Associated_feature | WBsf646733 | ||||||||
| WBsf661203 | |||||||||
| WBsf999719 | |||||||||
| WBsf1019451 | |||||||||
| WBsf1019452 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00027993 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038737 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1694 | ||||||||
| Expr4723 | |||||||||
| Expr13697 | |||||||||
| Expr1012316 | |||||||||
| Expr1031759 | |||||||||
| Expr1142948 | |||||||||
| Expr2014293 | |||||||||
| Expr2032534 | |||||||||
| Drives_construct (12) | |||||||||
| Construct_product | WBCnstr00000499 | ||||||||
| WBCnstr00012200 | |||||||||
| WBCnstr00015891 | |||||||||
| WBCnstr00035881 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (287) | |||||||||
| Interaction (72) | |||||||||
| WBProcess | WBbiopr:00000039 | ||||||||
| Map_info | Map | V | Position | -7.33508 | Error | 0.013926 | |||
| Positive | Positive_clone | B0213 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4937 | |||||||
| 5043 | |||||||||
| 5400 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (70) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
