WormBase Tree Display for Gene: WBGene00003741
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| WBGene00003741 | SMap | S_parent | Sequence | F48C11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nlp-3 | Person_evidence | WBPerson242 | |||||
| Sequence_name | F48C11.3 | ||||||||
| Molecular_name | F48C11.3 | ||||||||
| F48C11.3.1 | |||||||||
| CE10752 | |||||||||
| Other_name | CELE_F48C11.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | nlp-3 | ||||||||
| DB_info | Database | AceView | gene | XN796 | |||||
| WormQTL | gene | WBGene00003741 | |||||||
| WormFlux | gene | WBGene00003741 | |||||||
| NDB | locus_tag | CELE_F48C11.3 | |||||||
| NCBI | gene | 185978 | |||||||
| RefSeq | protein | NM_077786.4 | |||||||
| TREEFAM | TREEFAM_ID | TF318890 | |||||||
| TrEMBL | UniProtAcc | Q93745 | |||||||
| UniProt_GCRP | UniProtAcc | Q93745 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nlp | ||||||||
| Allele (23) | |||||||||
| Possibly_affected_by | WBVar02157222 | ||||||||
| Strain | WBStrain00032714 | ||||||||
| WBStrain00055079 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00086538 | ||||||||
| Ortholog (22) | |||||||||
| Structured_description | Concise_description | nlp-3 encodes a neuropeptide-like protein of the GFxGF family with similarity to orcokinins, highly conserved peptides native to crustaceans that enhance hindgut contractions; NLP-3 is expressed in neurons in the head, pharynx, and vulva, and in the intestine; the precise role of NLP-3 in nervous system function and development is not yet clear. | Paper_evidence | WBPaper00003915 | |||||
| WBPaper00004975 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in neuropeptide signaling pathway. Expressed in alimentary muscle; intestine; neurons; oocyte; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F48C11.3 | |||||||
| Corresponding_transcript | F48C11.3.1 | ||||||||
| Other_sequence (29) | |||||||||
| Associated_feature | WBsf654509 | ||||||||
| WBsf1007545 | |||||||||
| WBsf1024193 | |||||||||
| WBsf238103 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00032478 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00090703 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047734 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015240 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00101913 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014 | ||||||||
| Expr1688 | |||||||||
| Expr11106 | |||||||||
| Expr11455 | |||||||||
| Expr13788 | |||||||||
| Expr14261 | |||||||||
| Expr1019313 | |||||||||
| Expr1151567 | |||||||||
| Expr2014304 | |||||||||
| Expr2032545 | |||||||||
| Drives_construct | WBCnstr00001956 | ||||||||
| WBCnstr00010023 | |||||||||
| WBCnstr00010378 | |||||||||
| WBCnstr00018502 | |||||||||
| WBCnstr00018855 | |||||||||
| WBCnstr00019761 | |||||||||
| WBCnstr00035902 | |||||||||
| WBCnstr00040689 | |||||||||
| WBCnstr00042580 | |||||||||
| Construct_product | WBCnstr00010023 | ||||||||
| WBCnstr00018502 | |||||||||
| WBCnstr00035902 | |||||||||
| WBCnstr00042580 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (201) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | X | Position | 10.2198 | Error | 0.00249 | |||
| Positive | Positive_clone | F48C11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (30) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
