WormBase Tree Display for Gene: WBGene00003707
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| WBGene00003707 | SMap | S_parent | Sequence | Y46H3D | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-117 | Person_evidence | WBPerson600 | |||||
| Sequence_name | F16B4.12 | ||||||||
| Molecular_name | F16B4.12a | ||||||||
| F16B4.12a.1 | |||||||||
| CE24906 | |||||||||
| F16B4.12b | |||||||||
| CE30756 | |||||||||
| F16B4.12b.1 | |||||||||
| F16B4.12c | |||||||||
| Other_name | CELE_F16B4.12 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-117 | ||||||||
| DB_info | Database | AceView | gene | 5C98 | |||||
| WormQTL | gene | WBGene00003707 | |||||||
| NDB | locus_tag | CELE_F16B4.12 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003707|UniProtKB=O44638 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 24104436 | |||||||
| RefSeq | protein | NR_132511.1 | |||||||
| NM_001307790.4 | |||||||||
| NM_001307789.5 | |||||||||
| TrEMBL | UniProtAcc | Q8MNW2 | |||||||
| O44638 | |||||||||
| UniProt_GCRP | UniProtAcc | O44638 | |||||||
| RNAcentral | URSid | URS0000865531 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (46) | |||||||||
| Strain | WBStrain00036642 | ||||||||
| WBStrain00036663 | |||||||||
| WBStrain00036686 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00033004 | ||||||||
| 00033005 | |||||||||
| 00033006 | |||||||||
| 00033007 | |||||||||
| 00111625 | |||||||||
| 00111626 | |||||||||
| 00111627 | |||||||||
| 00111628 | |||||||||
| Ortholog (35) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in terminal bulb. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F16B4.12a | |||||||
| F16B4.12b | |||||||||
| Corresponding_transcript | F16B4.12c | ||||||||
| F16B4.12a.1 | |||||||||
| F16B4.12b.1 | |||||||||
| Other_sequence | CBC01358_1 | ||||||||
| Associated_feature | WBsf652474 | ||||||||
| WBsf978788 | |||||||||
| WBsf999372 | |||||||||
| WBsf1019204 | |||||||||
| WBsf233342 | |||||||||
| WBsf233343 | |||||||||
| Transcription_factor | WBTranscriptionFactor000680 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00044787 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044786 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031028 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9737 | ||||||||
| Expr9756 | |||||||||
| Expr9805 | |||||||||
| Expr1027021 | |||||||||
| Expr1148752 | |||||||||
| Expr2014015 | |||||||||
| Expr2032255 | |||||||||
| Drives_construct | WBCnstr00014257 | ||||||||
| WBCnstr00014276 | |||||||||
| WBCnstr00014325 | |||||||||
| WBCnstr00035928 | |||||||||
| Construct_product | WBCnstr00035928 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (144) | |||||||||
| Interaction | WBInteraction000199010 | ||||||||
| WBInteraction000226653 | |||||||||
| WBInteraction000230366 | |||||||||
| WBInteraction000256634 | |||||||||
| WBInteraction000351983 | |||||||||
| WBInteraction000390399 | |||||||||
| WBInteraction000396102 | |||||||||
| WBInteraction000433712 | |||||||||
| WBInteraction000519267 | |||||||||
| Map_info | Map | V | Position | -17.8745 | Error | 0.007514 | |||
| Positive | Positive_clone | F16B4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00028802 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
