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WormBase Tree Display for Gene: WBGene00003652

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Name Class

WBGene00003652EvidencePaper_evidenceWBPaper00003416
SMapS_parentSequenceCHROMOSOME_I
IdentityVersion1
NameCGC_namenhr-62Person_evidenceWBPerson600
Sequence_nameY67A6A.2
Molecular_name (12)
Other_nameCELE_Y67A6A.2Accession_evidenceNDBBX284601
Public_namenhr-62
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
Allele (67)
StrainWBStrain00035350
WBStrain00035351
WBStrain00035352
WBStrain00036320
RNASeq_FPKM (74)
GO_annotation (13)
OrthologWBGene00057242Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00026633Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00144501Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00117276Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00138649Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00142006Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00223242Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9437Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5247Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g7276Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g7859Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g4537Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g19356Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g8133Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g5613Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g12564Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10528Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00001.g75Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nhr-62Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold613.g5938Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00566.g12956Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17572Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000753Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09715Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g17725Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19135Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g5310Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10180400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1915Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242085Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00288616Trichuris murisFrom_analysisWormBase-Compara
Paralog (217)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in several structures, including excretory cell; intestine; neurons; spermatheca; and ventral nerve cord.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY67A6A.2a
Y67A6A.2b
Y67A6A.2c
Y67A6A.2d
Corresponding_CDS_historyY67A6A.2:wp47
Corresponding_transcriptY67A6A.2a.1
Y67A6A.2b.1
Y67A6A.2c.1
Y67A6A.2d.1
Other_sequence (20)
Associated_feature (11)
Transcription_factorWBTranscriptionFactor000667
Experimental_infoRNAi_resultWBRNAi00115756Inferred_automaticallyRNAi_primary
WBRNAi00037723Inferred_automaticallyRNAi_primary
WBRNAi00004776Inferred_automaticallyRNAi_primary
WBRNAi00003972Inferred_automaticallyRNAi_primary
WBRNAi00070622Inferred_automaticallyRNAi_primary
WBRNAi00057976Inferred_automaticallyRNAi_primary
WBRNAi00070623Inferred_automaticallyRNAi_primary
Expr_pattern (12)
Drives_constructWBCnstr00001160
WBCnstr00001161
WBCnstr00001162
WBCnstr00012882
WBCnstr00017066
WBCnstr00018060
WBCnstr00018271
WBCnstr00018272
WBCnstr00035969
Construct_productWBCnstr00017066
WBCnstr00018060
WBCnstr00018272
WBCnstr00035969
Regulate_expr_clusterWBPaper00044037:eat-2_regulated_nhr-62_dependent
Microarray_results (22)
Expression_cluster (208)
Interaction (20)
Map_infoMapIPosition3.91416Error0.00372
PositivePositive_cloneK10C3
Y67A6AInferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5233
4721
Pseudo_map_position
ReferenceWBPaper00027309
WBPaper00044037
WBPaper00053206
WBPaper00053706
WBPaper00062388
WBPaper00062515
WBPaper00064543
RemarkK10C3.1 has been fused into Y67A6A.2 [sdm 05/00]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene