WormBase Tree Display for Gene: WBGene00003649
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| WBGene00003649 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_V | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-59 | Person_evidence | WBPerson600 | |||||
| Sequence_name | T27B7.1 | ||||||||
| Molecular_name | T27B7.1a | ||||||||
| T27B7.1a.1 | |||||||||
| CE30194 | |||||||||
| T27B7.1b | |||||||||
| CE51053 | |||||||||
| T27B7.1b.1 | |||||||||
| Other_name | CELE_T27B7.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-59 | ||||||||
| DB_info | Database | AceView | gene | 5C756 | |||||
| WormQTL | gene | WBGene00003649 | |||||||
| WormFlux | gene | WBGene00003649 | |||||||
| NDB | locus_tag | CELE_T27B7.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003649|UniProtKB=Q9TXJ1 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 178707 | |||||||
| RefSeq | protein | NM_001316820.3 | |||||||
| NM_071223.8 | |||||||||
| SwissProt | UniProtAcc | Q9TXJ1 | |||||||
| TrEMBL | UniProtAcc | A0A0M9JJE1 | |||||||
| UniProt_GCRP | UniProtAcc | Q9TXJ1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (68) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00001785 | ||||||||
| 00097076 | |||||||||
| 00097077 | |||||||||
| 00097078 | |||||||||
| 00111402 | |||||||||
| 00111403 | |||||||||
| 00111404 | |||||||||
| 00111405 | |||||||||
| Ortholog (58) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T27B7.1a | |||||||
| T27B7.1b | |||||||||
| Corresponding_transcript | T27B7.1a.1 | ||||||||
| T27B7.1b.1 | |||||||||
| Other_sequence | CBC07202_1 | ||||||||
| Associated_feature | WBsf652505 | ||||||||
| WBsf999487 | |||||||||
| WBsf999488 | |||||||||
| WBsf1019282 | |||||||||
| WBsf233407 | |||||||||
| Transcription_factor | WBTranscriptionFactor000661 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00036020 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054273 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019307 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021187 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115852 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024884 | ||||||||
| Expr1157823 | |||||||||
| Expr2014209 | |||||||||
| Expr2032450 | |||||||||
| Drives_construct | WBCnstr00035971 | ||||||||
| Construct_product | WBCnstr00035971 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (122) | |||||||||
| Interaction | WBInteraction000141286 | ||||||||
| WBInteraction000246668 | |||||||||
| Map_info | Map | V | Position | -15.0232 | Error | 0.006515 | |||
| Positive | Positive_clone | T27B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4860 | |||||||
| 4829 | |||||||||
| 5365 | |||||||||
| 5418 | |||||||||
| 5583 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026592 | ||||||||
| WBPaper00027309 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
