WormBase Tree Display for Gene: WBGene00003647
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| WBGene00003647 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T05B4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-57 | Person_evidence | WBPerson600 | |||||
| Sequence_name | T05B4.2 | ||||||||
| Molecular_name | T05B4.2 | ||||||||
| T05B4.2.1 | |||||||||
| CE13195 | |||||||||
| Other_name | CELE_T05B4.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-57 | ||||||||
| DB_info | Database | AceView | gene | 5E613 | |||||
| WormQTL | gene | WBGene00003647 | |||||||
| WormFlux | gene | WBGene00003647 | |||||||
| NDB | locus_tag | CELE_T05B4.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003647|UniProtKB=O16425 | |||||||
| family | PTHR46011 | ||||||||
| NCBI | gene | 178813 | |||||||
| RefSeq | protein | NM_071752.8 | |||||||
| SwissProt | UniProtAcc | O16425 | |||||||
| TREEFAM | TREEFAM_ID | TF316453 | |||||||
| UniProt_GCRP | UniProtAcc | O16425 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (158) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (26) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity. Involved in response to hypoxia. Predicted to be located in nucleus. Expressed in several structures, including cephalic sheath cell; ciliated neurons; excretory system; intestine; and vulva. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T05B4.2 | |||||||
| Corresponding_transcript | T05B4.2.1 | ||||||||
| Associated_feature | WBsf646741 | ||||||||
| WBsf655087 | |||||||||
| WBsf661206 | |||||||||
| WBsf661207 | |||||||||
| WBsf978619 | |||||||||
| WBsf981919 | |||||||||
| WBsf231636 | |||||||||
| WBsf231637 | |||||||||
| WBsf231638 | |||||||||
| Transcription_factor | WBTranscriptionFactor000294 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00093233 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00000471 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115856 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093232 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098154 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00060974 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098183 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035180 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052471 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018205 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (13) | |||||||||
| Drives_construct | WBCnstr00000623 | ||||||||
| WBCnstr00010133 | |||||||||
| WBCnstr00012796 | |||||||||
| WBCnstr00014226 | |||||||||
| WBCnstr00015290 | |||||||||
| WBCnstr00015291 | |||||||||
| WBCnstr00015292 | |||||||||
| WBCnstr00035973 | |||||||||
| WBCnstr00041075 | |||||||||
| Construct_product | WBCnstr00010133 | ||||||||
| WBCnstr00035973 | |||||||||
| WBCnstr00041075 | |||||||||
| Microarray_results | SMD_T05B4.2 | ||||||||
| SMD_T05B4.2:2 | |||||||||
| 192189_at | |||||||||
| A_12_P112584 | |||||||||
| A_12_P130346 | |||||||||
| A_12_P130347 | |||||||||
| A_12_P130348 | |||||||||
| A_12_P130349 | |||||||||
| A_12_P130350 | |||||||||
| A_12_P155506 | |||||||||
| A_12_P155507 | |||||||||
| Aff_T05B4.2 | |||||||||
| GPL13394_WBGene00003647 | |||||||||
| GPL13914_T05B4.2 | |||||||||
| GPL14144_T05B4.2_1065-1124_0.916_8_C | |||||||||
| GPL14144_T05B4.2_797-856_0.943_1_A | |||||||||
| GPL14144_T05B4.2_929-988_0.928_2_B | |||||||||
| GPL19516_CGZ0033340 | |||||||||
| GPL21109_T05B4.2 | |||||||||
| GPL3518_CE13195 | |||||||||
| GPL8304_CE_WBGene00003647_A | |||||||||
| GPL8304_CE_WBGene00003647_B | |||||||||
| GPL8304_CE_WBGene00003647_C | |||||||||
| GPL8673_T05B4_2P00028 | |||||||||
| GPL8673_T05B4_2P00342 | |||||||||
| GPL8673_T05B4_2P00880 | |||||||||
| GPL9450_T05B4.2 | |||||||||
| cea2.c.38149 | |||||||||
| Expression_cluster (178) | |||||||||
| Interaction (22) | |||||||||
| WBProcess | WBbiopr:00000054 | ||||||||
| Map_info | Map | V | Position | -6.43458 | Error | 0.00801 | |||
| Positive | Positive_clone | T05B4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
