WormBase Tree Display for Gene: WBGene00003645

WBGene00003645 Evidence: Paper_evidence: WBPaper00003416
  SMap: S_parent: Sequence: T01G6
  Identity: Version: 1
    Name: CGC_name: nhr-55 Person_evidence: WBPerson600
      Sequence_name: T01G6.7
      Molecular_name: T01G6.7
        T01G6.7.1
        CE37786
      Other_name: CELE_T01G6.7 Accession_evidence: NDB BX284605
      Public_name: nhr-55
    DB_info: Database: AceView gene 5A957
        WormQTL gene WBGene00003645
        WormFlux gene WBGene00003645
        NDB locus_tag CELE_T01G6.7
        Panther gene CAEEL|WormBase=WBGene00003645|UniProtKB=O16962
          family PTHR45680
        NCBI gene 178570
        RefSeq protein NM_070814.6
        SwissProt UniProtAcc O16962
        TREEFAM TREEFAM_ID TF315604
        UniProt_GCRP UniProtAcc O16962
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (136)
    RNASeq_FPKM (74)
    GO_annotation: 00029039
      00029040
      00029041
      00029042
      00111386
      00111387
      00111388
      00111389
    Ortholog (63)
    Paralog (218)
    Structured_description: Concise_description: nhr-55 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. Paper_evidence: WBPaper00003416
          Curator_confirmed: WBPerson324
          Date_last_updated: 16 Nov 2005 00:00:00
      Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T01G6.7
    Corresponding_CDS_history: T01G6.7:wp135
    Corresponding_transcript: T01G6.7.1
    Other_sequence: CRC12055_1
      CBC02921_1
    Associated_feature: WBsf646634
      WBsf661099
      WBsf978885
      WBsf999167
      WBsf1019078
      WBsf231336
      WBsf231337
    Transcription_factor: WBTranscriptionFactor000433
  Experimental_info: RNAi_result: WBRNAi00052154 Inferred_automatically: RNAi_primary
      WBRNAi00017990 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025696
      Expr1031687
      Expr1155789
      Expr2014205
      Expr2032446
    Drives_construct: WBCnstr00035975
    Construct_product: WBCnstr00035975
    Microarray_results (19)
    Expression_cluster (125)
  Map_info: Map: V Position: -19.99
    Positive: Positive_clone: T01G6 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4989
        5347
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00057578
    WBPaper00062912
    WBPaper00065331
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene