WormBase Tree Display for Gene: WBGene00003645
expand all nodes | collapse all nodes | view schema
WBGene00003645 | Evidence | Paper_evidence | WBPaper00003416 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | T01G6 | |||
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | nhr | |||||
Allele (136) | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00029039 | |||||
00029040 | ||||||
00029041 | ||||||
00029042 | ||||||
00111386 | ||||||
00111387 | ||||||
00111388 | ||||||
00111389 | ||||||
Ortholog (63) | ||||||
Paralog (218) | ||||||
Structured_description | Concise_description | nhr-55 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. | Paper_evidence | WBPaper00003416 | ||
Curator_confirmed | WBPerson324 | |||||
Date_last_updated | 16 Nov 2005 00:00:00 | |||||
Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | T01G6.7 | ||||
Corresponding_CDS_history | T01G6.7:wp135 | |||||
Corresponding_transcript | T01G6.7.1 | |||||
Other_sequence | CRC12055_1 | |||||
CBC02921_1 | ||||||
Associated_feature | WBsf646634 | |||||
WBsf661099 | ||||||
WBsf978885 | ||||||
WBsf999167 | ||||||
WBsf1019078 | ||||||
WBsf231336 | ||||||
WBsf231337 | ||||||
Transcription_factor | WBTranscriptionFactor000433 | |||||
Experimental_info | RNAi_result | WBRNAi00052154 | Inferred_automatically | RNAi_primary | ||
WBRNAi00017990 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1025696 | |||||
Expr1031687 | ||||||
Expr1155789 | ||||||
Expr2014205 | ||||||
Expr2032446 | ||||||
Drives_construct | WBCnstr00035975 | |||||
Construct_product | WBCnstr00035975 | |||||
Microarray_results (19) | ||||||
Expression_cluster (125) | ||||||
Map_info | Map | V | Position | -19.99 | ||
Positive | Positive_clone | T01G6 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Mapping_data | Multi_point | 4989 | ||||
5347 | ||||||
Pseudo_map_position | ||||||
Reference | WBPaper00027309 | |||||
WBPaper00057578 | ||||||
WBPaper00062912 | ||||||
WBPaper00065331 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |