WormBase Tree Display for Gene: WBGene00003625
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| WBGene00003625 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C26B2 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-31 | Person_evidence | WBPerson600 | |||||
| Sequence_name | C26B2.3 | ||||||||
| Molecular_name | C26B2.3a | ||||||||
| C26B2.3a.1 | |||||||||
| CE17474 | |||||||||
| C26B2.3c | |||||||||
| CE37709 | |||||||||
| C26B2.3a.2 | |||||||||
| C26B2.3b | |||||||||
| C26B2.3c.1 | |||||||||
| Other_name | CELE_C26B2.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nhr-31 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (74) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (29) | |||||||||
| Paralog (15) | |||||||||
| Structured_description | Concise_description | nhr-31 encodes one of over 200 C. elegans nuclear receptors; nhr-31 activity is required for proper growth, development, and function of the excretory cell; in regulating excretory cell development, NHR-31 appears to function by controlling the expression of genes encoding subunits of the vacuolar ATPase; an nhr-31::gfp promoter fusion is expressed at high levels in the excretory cell beginning at embryogenesis and continuing through adulthood, with lower levels of expression seen in the intestine and unidentified tail cells. | Paper_evidence | WBPaper00035075 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 14 Aug 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Involved in embryo development; post-embryonic animal morphogenesis; and response to osmotic stress. Predicted to be located in nucleus. Expressed in excretory cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C26B2.3a | |||||||
| C26B2.3c | |||||||||
| Corresponding_CDS_history | C26B2.3b:wp241 | ||||||||
| Corresponding_transcript | C26B2.3b | ||||||||
| C26B2.3a.1 | |||||||||
| C26B2.3a.2 | |||||||||
| C26B2.3c.1 | |||||||||
| Other_sequence (12) | |||||||||
| Associated_feature (17) | |||||||||
| Transcription_factor | WBTranscriptionFactor000470 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00041237 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011197 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8773 | ||||||||
| Expr1016373 | |||||||||
| Expr1031671 | |||||||||
| Expr1145276 | |||||||||
| Expr2014180 | |||||||||
| Expr2032421 | |||||||||
| Drives_construct | WBCnstr00013511 | ||||||||
| WBCnstr00035990 | |||||||||
| Construct_product | WBCnstr00035990 | ||||||||
| Microarray_results (36) | |||||||||
| Expression_cluster (174) | |||||||||
| Interaction (64) | |||||||||
| Map_info | Map | IV | Position | 3.58435 | Error | 0.001392 | |||
| Positive | Positive_clone | C26B2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4932 | |||||||
| 4999 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00028017 | |||||||||
| WBPaper00030611 | |||||||||
| WBPaper00035075 | |||||||||
| WBPaper00049011 | |||||||||
| WBPaper00056742 | |||||||||
| WBPaper00060760 | |||||||||
| WBPaper00065140 | |||||||||
| Remark | orf mislabelled as nhr-21 in genbank [Sluder A][030102 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
