WormBase Tree Display for Gene: WBGene00003624

WBGene00003624 Evidence: Paper_evidence: WBPaper00003416
  SMap: S_parent: Sequence: C11G6
  Identity: Version: 1
    Name: CGC_name: nhr-28 Person_evidence: WBPerson600
      Sequence_name: C11G6.4
      Molecular_name: C11G6.4a
        C11G6.4a.1
        CE27061
        C11G6.4b
        CE37954
        C11G6.4b.1
        C11G6.4b.2
      Other_name: CELE_C11G6.4 Accession_evidence: NDB BX284606
      Public_name: nhr-28
    DB_info: Database: AceView gene XQ973
        WormQTL gene WBGene00003624
        WormFlux gene WBGene00003624
        NDB locus_tag CELE_C11G6.4
        Panther gene CAEEL|WormBase=WBGene00003624|UniProtKB=Q17905
          family PTHR46011
        NCBI gene 181705
        RefSeq protein NM_001029217.7
            NM_001029218.7
        SwissProt UniProtAcc Q17905
        TREEFAM TREEFAM_ID TF315401
        UniProt_GCRP UniProtAcc Q17905
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (67)
    Strain: WBStrain00036469
    RNASeq_FPKM (74)
    GO_annotation (14)
    Ortholog (28)
    Paralog (218)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in hypodermis; intestine; and pharynx. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C11G6.4a
      C11G6.4b
    Corresponding_CDS_history: C11G6.4:wp47
      C11G6.4:wp138
    Corresponding_transcript: C11G6.4a.1
      C11G6.4b.1
      C11G6.4b.2
    Other_sequence: HBC20016_1
      EX011084.1
      CRC08495_1
      CR10545
      Hbac_isotig04649
    Associated_feature (22)
    Gene_product_binds (11846)
    Transcription_factor: WBTranscriptionFactor000694
  Experimental_info: RNAi_result: WBRNAi00040361 Inferred_automatically: RNAi_primary
      WBRNAi00028810 Inferred_automatically: RNAi_primary
      WBRNAi00084680 Inferred_automatically: RNAi_primary
      WBRNAi00112403 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1180
      Expr7432
      Expr1014865
      Expr1031670
      Expr1144426
      Expr1200097
      Expr2014177
      Expr2032418
    Drives_construct: WBCnstr00010132
      WBCnstr00012575
      WBCnstr00035991
    Construct_product: WBCnstr00010132
      WBCnstr00016734
      WBCnstr00035991
    Microarray_results (34)
    Expression_cluster: WBPaper00032976:non_compensated_genes
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:dopaminergic-neurons_larva_SelectivelyEnriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00046338:intestine_unique
      WBPaper00048988:neuron_expressed
      WBPaper00050332:skn-1(RNAi)_downregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053810:clk-1(qm30)_upregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00056275:P.aeruginosa_upregulated
      WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependent
      WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061340:Arcade_cell_anterior_and_posterior
      WBPaper00061340:hyp4_hyp5_hyp6
      WBPaper00061527:cdc-42_17192-rab-5_18073
      WBPaper00061527:ldb-1_2877-scd-1_3086
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064005:starvation_downregulated_N2_mRNA
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064716:paraquat_downregulated
      WBPaper00065841:9_0
      WBPaper00065841:9_1
      WBPaper00065841:9_2
      WBPaper00065841:15_0
      WBPaper00065841:27_0
      WBPaper00065993:glp-1(e2141)_upregulated
      cgc4489_group_13
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00034739:N2moreDR1350
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00036286:Pattern_I
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00041939:control_vs_EtBr-exposed_51h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00055899:nitroguanidine_regulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(143_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SE_pi(143_min)
    Interaction (74)
  Map_info: Map: X Position: 23.8459 Error: 0.025708
    Positive: Positive_clone: C11G6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003754
    WBPaper00027309
    WBPaper00047685
    WBPaper00057915
    WBPaper00058109
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene