WormBase Tree Display for Gene: WBGene00003624
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| WBGene00003624 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C11G6 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-28 | Person_evidence | WBPerson600 | |||||
| Sequence_name | C11G6.4 | ||||||||
| Molecular_name | C11G6.4a | ||||||||
| C11G6.4a.1 | |||||||||
| CE27061 | |||||||||
| C11G6.4b | |||||||||
| CE37954 | |||||||||
| C11G6.4b.1 | |||||||||
| C11G6.4b.2 | |||||||||
| Other_name | CELE_C11G6.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | nhr-28 | ||||||||
| DB_info | Database | AceView | gene | XQ973 | |||||
| WormQTL | gene | WBGene00003624 | |||||||
| WormFlux | gene | WBGene00003624 | |||||||
| NDB | locus_tag | CELE_C11G6.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003624|UniProtKB=Q17905 | |||||||
| family | PTHR46011 | ||||||||
| NCBI | gene | 181705 | |||||||
| RefSeq | protein | NM_001029217.7 | |||||||
| NM_001029218.7 | |||||||||
| SwissProt | UniProtAcc | Q17905 | |||||||
| TREEFAM | TREEFAM_ID | TF315401 | |||||||
| UniProt_GCRP | UniProtAcc | Q17905 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (67) | |||||||||
| Strain | WBStrain00036469 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (28) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in hypodermis; intestine; and pharynx. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C11G6.4a | |||||||
| C11G6.4b | |||||||||
| Corresponding_CDS_history | C11G6.4:wp47 | ||||||||
| C11G6.4:wp138 | |||||||||
| Corresponding_transcript | C11G6.4a.1 | ||||||||
| C11G6.4b.1 | |||||||||
| C11G6.4b.2 | |||||||||
| Other_sequence | HBC20016_1 | ||||||||
| EX011084.1 | |||||||||
| CRC08495_1 | |||||||||
| CR10545 | |||||||||
| Hbac_isotig04649 | |||||||||
| Associated_feature (22) | |||||||||
| Gene_product_binds (11846) | |||||||||
| Transcription_factor | WBTranscriptionFactor000694 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00040361 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00028810 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084680 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112403 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1180 | ||||||||
| Expr7432 | |||||||||
| Expr1014865 | |||||||||
| Expr1031670 | |||||||||
| Expr1144426 | |||||||||
| Expr1200097 | |||||||||
| Expr2014177 | |||||||||
| Expr2032418 | |||||||||
| Drives_construct | WBCnstr00010132 | ||||||||
| WBCnstr00012575 | |||||||||
| WBCnstr00035991 | |||||||||
| Construct_product | WBCnstr00010132 | ||||||||
| WBCnstr00016734 | |||||||||
| WBCnstr00035991 | |||||||||
| Microarray_results (34) | |||||||||
| Expression_cluster (93) | |||||||||
| Interaction (74) | |||||||||
| Map_info | Map | X | Position | 23.8459 | Error | 0.025708 | |||
| Positive | Positive_clone | C11G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003754 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00047685 | |||||||||
| WBPaper00057915 | |||||||||
| WBPaper00058109 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
