WormBase Tree Display for Gene: WBGene00003619
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| WBGene00003619 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F43C1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-20 | Person_evidence | WBPerson600 | |||||
| Sequence_name | F43C1.4 | ||||||||
| Molecular_name | F43C1.4 | ||||||||
| F43C1.4.1 | |||||||||
| CE28025 | |||||||||
| Other_name | CELE_F43C1.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | nhr-20 | ||||||||
| DB_info | Database | AceView | gene | 3F320 | |||||
| WormQTL | gene | WBGene00003619 | |||||||
| WormFlux | gene | WBGene00003619 | |||||||
| NDB | locus_tag | CELE_F43C1.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003619|UniProtKB=Q09565 | |||||||
| family | PTHR46397 | ||||||||
| NCBI | gene | 175546 | |||||||
| RefSeq | protein | NM_065448.7 | |||||||
| SwissProt | UniProtAcc | Q09565 | |||||||
| TREEFAM | TREEFAM_ID | TF321941 | |||||||
| UniProt_GCRP | UniProtAcc | Q09565 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (45) | |||||||||
| Legacy_information | NMK. Nuclear hormone receptor superfamily. [AE] | ||||||||
| [C.elegansII] NMK. Nuclear hormone receptor superfamily. Sequenced: F43C1.4[AE] | |||||||||
| Strain | WBStrain00002155 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00054762 | ||||||||
| 00054763 | |||||||||
| 00054764 | |||||||||
| 00054765 | |||||||||
| 00054766 | |||||||||
| 00054767 | |||||||||
| 00111278 | |||||||||
| 00111279 | |||||||||
| 00111280 | |||||||||
| 00111281 | |||||||||
| Ortholog (29) | |||||||||
| Paralog (225) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in head and tail. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F43C1.4 | |||||||
| Corresponding_CDS_history | F43C1.4:wp52 | ||||||||
| Corresponding_transcript | F43C1.4.1 | ||||||||
| Other_sequence | ES744626.1 | ||||||||
| CBC14188_1 | |||||||||
| HBC13051_1 | |||||||||
| Associated_feature | WBsf716539 | ||||||||
| WBsf978692 | |||||||||
| WBsf992069 | |||||||||
| WBsf992070 | |||||||||
| WBsf1014726 | |||||||||
| WBsf226493 | |||||||||
| WBsf226494 | |||||||||
| Transcription_factor | WBTranscriptionFactor000287 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00005221 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032172 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047163 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1185 | ||||||||
| Expr6057 | |||||||||
| Expr6058 | |||||||||
| Expr7556 | |||||||||
| Expr1017934 | |||||||||
| Expr1031665 | |||||||||
| Expr1151024 | |||||||||
| Expr2014113 | |||||||||
| Expr2032352 | |||||||||
| Drives_construct | WBCnstr00002914 | ||||||||
| WBCnstr00002915 | |||||||||
| WBCnstr00010137 | |||||||||
| WBCnstr00012701 | |||||||||
| WBCnstr00035995 | |||||||||
| Construct_product | WBCnstr00010137 | ||||||||
| WBCnstr00016480 | |||||||||
| WBCnstr00021750 | |||||||||
| WBCnstr00035995 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (113) | |||||||||
| Interaction (65) | |||||||||
| Map_info | Map | III | Position | -3.52868 | Error | 0.059109 | |||
| Positive | Positive_clone | F43C1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003754 | ||||||||
| WBPaper00012651 | |||||||||
| WBPaper00015440 | |||||||||
| WBPaper00022044 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00062625 | |||||||||
| Remark | Map III Position -3.810000 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
