WormBase Tree Display for Gene: WBGene00003606
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WBGene00003606 | Evidence | Paper_evidence | WBPaper00003416 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F54D1 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nhr | ||||||
Allele (73) | |||||||
Legacy_information | NMK. Nuclear hormone receptor superfamily.[AE] | ||||||
[C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y72H7 etc. [AE] | |||||||
Strain (3) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (15) | |||||||
Ortholog (30) | |||||||
Paralog (216) | |||||||
Structured_description | Concise_description | nhr-7 encodes one of over 200 C. elegans nuclear receptors; nhr-7 appears to belong to a class of nematode-specific nuclear receptors. | Paper_evidence | WBPaper00003416 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 12 Aug 2009 00:00:00 | ||||||
Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation; hormone-mediated signaling pathway; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F54D1.4a | |||||
Corresponding_CDS_history | F54D1.4:wp52 | ||||||
F54D1.4:wp71 | |||||||
Corresponding_transcript | F54D1.4b | ||||||
F54D1.4a.1 | |||||||
F54D1.4a.2 | |||||||
Other_sequence | AF083225 | ||||||
Oden_isotig25985 | |||||||
Oden_isotig22591 | |||||||
BXC05747_1 | |||||||
Associated_feature | WBsf978488 | ||||||
Transcription_factor | WBTranscriptionFactor000656 | ||||||
Experimental_info | RNAi_result | WBRNAi00002401 | Inferred_automatically | RNAi_primary | |||
WBRNAi00107190 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015596 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00107533 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00107252 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027857 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00048281 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00092054 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00107407 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1020255 | ||||||
Expr1152083 | |||||||
Expr1200093 | |||||||
Expr2014231 | |||||||
Expr2032472 | |||||||
Drives_construct | WBCnstr00036007 | ||||||
Construct_product | WBCnstr00036007 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (164) | |||||||
Interaction (11) | |||||||
Map_info | Map | IV | Position | 4.93519 | Error | 0.00233 | |
Positive | Positive_clone | F54D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Y37G7 | Person_evidence | WBPerson600 | |||||
Author_evidence | Maina CV | ||||||
Y51B3 | Person_evidence | WBPerson600 | |||||
Author_evidence | Maina CV | ||||||
Y72H7 | Person_evidence | WBPerson600 | |||||
Author_evidence | Maina CV | ||||||
Pseudo_map_position | |||||||
Reference | WBPaper00003416 | ||||||
WBPaper00027309 | |||||||
Remark | LG IV | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |