WormBase Tree Display for Gene: WBGene00003606
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WBGene00003606 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F54D1 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | nhr-7 | Person_evidence | WBPerson600 | |||||
Sequence_name | F54D1.4 | ||||||||
Molecular_name | F54D1.4a | ||||||||
F54D1.4a.1 | |||||||||
CE20866 | |||||||||
F54D1.4a.2 | |||||||||
F54D1.4b | |||||||||
Other_name | CELE_F54D1.4 | Accession_evidence | NDB | BX284604 | |||||
Public_name | nhr-7 | ||||||||
DB_info | Database | AceView | gene | 4M32 | |||||
WormQTL | gene | WBGene00003606 | |||||||
WormFlux | gene | WBGene00003606 | |||||||
NDB | locus_tag | CELE_F54D1.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003606|UniProtKB=Q20765 | |||||||
family | PTHR24082 | ||||||||
NCBI | gene | 178035 | |||||||
RefSeq | protein | NM_069716.8 | |||||||
NR_138498.1 | |||||||||
SwissProt | UniProtAcc | Q20765 | |||||||
UniProt_GCRP | UniProtAcc | Q20765 | |||||||
RNAcentral | URSid | URS0000A4AB93 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhr | ||||||||
Allele (73) | |||||||||
Legacy_information | NMK. Nuclear hormone receptor superfamily.[AE] | ||||||||
[C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y72H7 etc. [AE] | |||||||||
Strain | WBStrain00036738 | ||||||||
WBStrain00036747 | |||||||||
WBStrain00030118 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (15) | |||||||||
Ortholog | WBGene00028390 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
OrthoMCL | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00175054 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00157522 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
WBGene00127569 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
WBGene00062559 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
WBGene00113772 | Pristionchus pacificus | From_analysis | Inparanoid_8 | ||||||
WBGene00223242 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
CBOVI.g11532 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g9743 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g19346 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g20905 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g19677 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g15681 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g1096 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g11108 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g12693 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g19578 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_00943.g15050 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cni-nhr-7 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g8062 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_02691.g27565 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
GCK72_014087 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g02873 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
Pan_g7925 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
Sp34_40317800 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrIV_pilon.g11813 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00242085 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00278742 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00266881 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
WBGene00288616 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
Paralog (216) | |||||||||
Structured_description | Concise_description | nhr-7 encodes one of over 200 C. elegans nuclear receptors; nhr-7 appears to belong to a class of nematode-specific nuclear receptors. | Paper_evidence | WBPaper00003416 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 12 Aug 2009 00:00:00 | ||||||||
Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation; hormone-mediated signaling pathway; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F54D1.4a | |||||||
Corresponding_CDS_history | F54D1.4:wp52 | ||||||||
F54D1.4:wp71 | |||||||||
Corresponding_transcript | F54D1.4b | ||||||||
F54D1.4a.1 | |||||||||
F54D1.4a.2 | |||||||||
Other_sequence | AF083225 | ||||||||
Oden_isotig25985 | |||||||||
Oden_isotig22591 | |||||||||
BXC05747_1 | |||||||||
Associated_feature | WBsf978488 | ||||||||
Transcription_factor | WBTranscriptionFactor000656 | ||||||||
Experimental_info | RNAi_result | WBRNAi00002401 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00107190 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00015596 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00107533 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00107252 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027857 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00048281 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092054 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00107407 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1020255 | ||||||||
Expr1152083 | |||||||||
Expr1200093 | |||||||||
Expr2014231 | |||||||||
Expr2032472 | |||||||||
Drives_construct | WBCnstr00036007 | ||||||||
Construct_product | WBCnstr00036007 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (164) | |||||||||
Interaction (11) | |||||||||
Map_info | Map | IV | Position | 4.93519 | Error | 0.00233 | |||
Positive | Positive_clone | F54D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Y37G7 | Person_evidence | WBPerson600 | |||||||
Author_evidence | Maina CV | ||||||||
Y51B3 | Person_evidence | WBPerson600 | |||||||
Author_evidence | Maina CV | ||||||||
Y72H7 | Person_evidence | WBPerson600 | |||||||
Author_evidence | Maina CV | ||||||||
Pseudo_map_position | |||||||||
Reference (2) | |||||||||
Remark | LG IV | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |