WormBase Tree Display for Gene: WBGene00003606
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| WBGene00003606 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F54D1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-7 | Person_evidence | WBPerson600 | |||||
| Sequence_name | F54D1.4 | ||||||||
| Molecular_name (5) | |||||||||
| Other_name | CELE_F54D1.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nhr-7 | ||||||||
| DB_info | Database | AceView | gene | 4M32 | |||||
| WormQTL | gene | WBGene00003606 | |||||||
| WormFlux | gene | WBGene00003606 | |||||||
| NDB | locus_tag | CELE_F54D1.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003606|UniProtKB=Q20765 | |||||||
| family | PTHR24082 | ||||||||
| NCBI | gene | 178035 | |||||||
| RefSeq | protein | NM_069716.8 | |||||||
| NR_138498.1 | |||||||||
| SwissProt | UniProtAcc | Q20765 | |||||||
| UniProt_GCRP | UniProtAcc | Q20765 | |||||||
| RNAcentral | URSid | URS0000A4AB93 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele | WBVar02058952 | ||||||||
| WBVar01500079 | |||||||||
| WBVar00276693 | |||||||||
| WBVar01731091 | |||||||||
| WBVar00942209 | |||||||||
| WBVar00942210 | |||||||||
| WBVar00942211 | |||||||||
| WBVar00942212 | |||||||||
| WBVar00942213 | |||||||||
| WBVar00942214 | |||||||||
| WBVar00942215 | |||||||||
| WBVar00942216 | |||||||||
| WBVar00942217 | |||||||||
| WBVar01498996 | |||||||||
| WBVar00942218 | |||||||||
| WBVar00942219 | |||||||||
| WBVar00942220 | |||||||||
| WBVar00942221 | |||||||||
| WBVar00942222 | |||||||||
| WBVar00942223 | |||||||||
| WBVar00942224 | |||||||||
| WBVar00942225 | |||||||||
| WBVar00942226 | |||||||||
| WBVar01499925 | |||||||||
| WBVar00942227 | |||||||||
| WBVar00942228 | |||||||||
| WBVar00942229 | |||||||||
| WBVar00942230 | |||||||||
| WBVar00942231 | |||||||||
| WBVar00942232 | |||||||||
| WBVar00942233 | |||||||||
| WBVar00942234 | |||||||||
| WBVar00942235 | |||||||||
| WBVar00942236 | |||||||||
| WBVar00942237 | |||||||||
| WBVar02134674 | |||||||||
| WBVar00942238 | |||||||||
| WBVar00942239 | |||||||||
| WBVar00942240 | |||||||||
| WBVar00146076 | |||||||||
| WBVar00146080 | |||||||||
| WBVar01499585 | |||||||||
| WBVar01857931 | |||||||||
| WBVar01499586 | |||||||||
| WBVar01857932 | |||||||||
| WBVar01857933 | |||||||||
| WBVar01857934 | |||||||||
| WBVar01857935 | |||||||||
| WBVar01857936 | |||||||||
| WBVar02021259 | |||||||||
| WBVar01831835 | |||||||||
| WBVar00191978 | |||||||||
| WBVar00191980 | |||||||||
| WBVar00191981 | |||||||||
| WBVar00191982 | |||||||||
| WBVar00435593 | |||||||||
| WBVar00435594 | |||||||||
| WBVar00435595 | |||||||||
| WBVar00435596 | |||||||||
| WBVar00435597 | |||||||||
| WBVar00435598 | |||||||||
| WBVar00435599 | |||||||||
| WBVar00435600 | |||||||||
| WBVar01688139 | |||||||||
| WBVar00435601 | |||||||||
| WBVar00435602 | |||||||||
| WBVar00435603 | |||||||||
| WBVar00435604 | |||||||||
| WBVar01795541 | |||||||||
| WBVar02151409 | |||||||||
| WBVar00142794 | |||||||||
| WBVar01454188 | |||||||||
| WBVar01500245 | |||||||||
| Legacy_information | NMK. Nuclear hormone receptor superfamily.[AE] | ||||||||
| [C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y72H7 etc. [AE] | |||||||||
| Strain | WBStrain00036738 | ||||||||
| WBStrain00036747 | |||||||||
| WBStrain00030118 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (30) | |||||||||
| Paralog (216) | |||||||||
| Structured_description | Concise_description | nhr-7 encodes one of over 200 C. elegans nuclear receptors; nhr-7 appears to belong to a class of nematode-specific nuclear receptors. | Paper_evidence | WBPaper00003416 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Aug 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation; hormone-mediated signaling pathway; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54D1.4a | |||||||
| Corresponding_CDS_history | F54D1.4:wp52 | ||||||||
| F54D1.4:wp71 | |||||||||
| Corresponding_transcript | F54D1.4b | ||||||||
| F54D1.4a.1 | |||||||||
| F54D1.4a.2 | |||||||||
| Other_sequence | AF083225 | ||||||||
| Oden_isotig25985 | |||||||||
| Oden_isotig22591 | |||||||||
| BXC05747_1 | |||||||||
| Associated_feature | WBsf978488 | ||||||||
| Transcription_factor | WBTranscriptionFactor000656 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00002401 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00107190 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015596 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107533 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107252 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027857 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048281 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092054 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107407 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020255 | ||||||||
| Expr1152083 | |||||||||
| Expr1200093 | |||||||||
| Expr2014231 | |||||||||
| Expr2032472 | |||||||||
| Drives_construct | WBCnstr00036007 | ||||||||
| Construct_product | WBCnstr00036007 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (164) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | IV | Position | 4.93519 | Error | 0.00233 | |||
| Positive | Positive_clone | F54D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Y37G7 | Person_evidence | WBPerson600 | |||||||
| Author_evidence | Maina CV | ||||||||
| Y51B3 | Person_evidence | WBPerson600 | |||||||
| Author_evidence | Maina CV | ||||||||
| Y72H7 | Person_evidence | WBPerson600 | |||||||
| Author_evidence | Maina CV | ||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003416 | ||||||||
| WBPaper00027309 | |||||||||
| Remark | LG IV | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
