Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00003606

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00003606EvidencePaper_evidenceWBPaper00003416
SMapS_parentSequenceF54D1
IdentityVersion1
NameCGC_namenhr-7Person_evidenceWBPerson600
Sequence_nameF54D1.4
Molecular_nameF54D1.4a
F54D1.4a.1
CE20866
F54D1.4a.2
F54D1.4b
Other_nameCELE_F54D1.4Accession_evidenceNDBBX284604
Public_namenhr-7
DB_infoDatabaseAceViewgene4M32
WormQTLgeneWBGene00003606
WormFluxgeneWBGene00003606
NDBlocus_tagCELE_F54D1.4
PanthergeneCAEEL|WormBase=WBGene00003606|UniProtKB=Q20765
familyPTHR24082
NCBIgene178035
RefSeqproteinNM_069716.8
NR_138498.1
SwissProtUniProtAccQ20765
UniProt_GCRPUniProtAccQ20765
RNAcentralURSidURS0000A4AB93
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
Allele (73)
Legacy_informationNMK. Nuclear hormone receptor superfamily.[AE]
[C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y72H7 etc. [AE]
StrainWBStrain00036738
WBStrain00036747
WBStrain00030118
RNASeq_FPKM (74)
GO_annotation (15)
Ortholog (30)
Paralog (216)
Structured_descriptionConcise_descriptionnhr-7 encodes one of over 200 C. elegans nuclear receptors; nhr-7 appears to belong to a class of nematode-specific nuclear receptors.Paper_evidenceWBPaper00003416
Curator_confirmedWBPerson1843
Date_last_updated12 Aug 2009 00:00:00
Automated_descriptionPredicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation; hormone-mediated signaling pathway; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF54D1.4a
Corresponding_CDS_historyF54D1.4:wp52
F54D1.4:wp71
Corresponding_transcriptF54D1.4b
F54D1.4a.1
F54D1.4a.2
Other_sequenceAF083225
Oden_isotig25985
Oden_isotig22591
BXC05747_1
Associated_featureWBsf978488
Transcription_factorWBTranscriptionFactor000656
Experimental_infoRNAi_resultWBRNAi00002401Inferred_automaticallyRNAi_primary
WBRNAi00107190Inferred_automaticallyRNAi_primary
WBRNAi00015596Inferred_automaticallyRNAi_primary
WBRNAi00107533Inferred_automaticallyRNAi_primary
WBRNAi00107252Inferred_automaticallyRNAi_primary
WBRNAi00027857Inferred_automaticallyRNAi_primary
WBRNAi00048281Inferred_automaticallyRNAi_primary
WBRNAi00092054Inferred_automaticallyRNAi_primary
WBRNAi00107407Inferred_automaticallyRNAi_primary
Expr_patternExpr1020255
Expr1152083
Expr1200093
Expr2014231
Expr2032472
Drives_constructWBCnstr00036007
Construct_productWBCnstr00036007
Microarray_resultsSMD_F54D1.4
SMD_F54D1.4:2
192920_s_at
A_12_P100623
Aff_F54D1.4
GPL13394_WBGene00003606
GPL13914_F54D1.4
GPL14144_F54D1.4_1385-1444_0.939_3_C
GPL14144_F54D1.4_564-623_0.844_42_A
GPL14144_F54D1.4_64-123_0.834_52_B
GPL19516_CGZ0023716
GPL21109_F54D1.4
GPL3518_CE20866
GPL8304_CE_WBGene00003606_A
GPL8673_F54D1_4P00619
GPL8673_F54D1_4P00884
GPL8673_F54D1_4P01156
GPL9450_F54D1.4
cea2.c.28981
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:excretory-cell_larva_enriched
WBPaper00037950:excretory-cell_larva_SelectivelyEnriched
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_larva_SelectivelyEnriched
WBPaper00037950:pharyngeal-muscle_embryo_enriched
WBPaper00037950:pharyngeal-muscle_embryo_SelectivelyEnriched
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044743:wdr-23_neuron_upregulated
WBPaper00045017:blmp-1(tm548)_upregulated
WBPaper00045316:prg-1_upregulated_L4
WBPaper00046338:pharynx_unique
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00048988:daf-2(e1370)_upregulated_neuron
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00051404:alg-2(ok304)_upregulated
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(ot267)_downregulated
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053810:clk-1(qm30)_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054410:set-9(rw5)_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055226:ADR-2_target_N2
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Psora_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055648:anterior-head_expressed
WBPaper00055648:pharynx_expressed
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056169:rrf-3(pk1426)_downregulated_L2
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00058948:npr-8(ok1439)_downregulated_OP50
WBPaper00058969:RIS_depleted
WBPaper00059537:ngn-1(ok2200)_upregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061340:AMsh
WBPaper00061340:Arcade_cell_anterior_and_posterior
WBPaper00061340:g2_parent
WBPaper00061340:hmc_and_homolog
WBPaper00061340:mc2
WBPaper00061340:pm6
WBPaper00061340:Z1_Z4
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061527:T16H12.9-kin-9_20752
WBPaper00061995:mter-4(syb3662syb3403)_downregulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064156:lbp-3(overexpress)_upregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00064939:vit-5(RNAi)_upregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_downregulated_N2
WBPaper00065841:5_0
WBPaper00065841:5_1
WBPaper00065841:9_0
WBPaper00065841:9_1
WBPaper00065841:9_2
WBPaper00065841:15_0
WBPaper00065841:24_0
WBPaper00065841:24_1
WBPaper00065841:26_0
WBPaper00065841:26_1
WBPaper00065841:27_0
WBPaper00065841:37_0
WBPaper00065841:141_0
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
cgc4489_group_14
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00030985:Enterococcus_faecalis_downregulated
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031252:AIN-1_IP_enriched
WBPaper00034739:N2moreDR1350
WBPaper00038172:crh-1null_up_regulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00041174:environmental
WBPaper00041174:genotypic
WBPaper00041174:genotypic_and_environmental
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00045673:colistin_downregulated
WBPaper00046548:dafachronic-acid_downregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
Interaction (11)
Map_infoMapIVPosition4.93519Error0.00233
PositivePositive_cloneF54D1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Y37G7Person_evidenceWBPerson600
Author_evidenceMaina CV
Y51B3Person_evidenceWBPerson600
Author_evidenceMaina CV
Y72H7Person_evidenceWBPerson600
Author_evidenceMaina CV
Pseudo_map_position
ReferenceWBPaper00003416
WBPaper00027309
RemarkLG IV
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene