WormBase Tree Display for Gene: WBGene00003525
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| WBGene00003525 | Evidence | Author_evidence | Moehrlen F | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | 4R79 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nas-6 | Person_evidence | WBPerson1103 | |||||
| Sequence_name | 4R79.1 | ||||||||
| Molecular_name | 4R79.1a | ||||||||
| 4R79.1a.1 | |||||||||
| CE35820 | |||||||||
| 4R79.1b | |||||||||
| CE39659 | |||||||||
| 4R79.1b.1 | |||||||||
| 4R79.1c | |||||||||
| Other_name | CELE_4R79.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nas-6 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nas | ||||||||
| Allele (102) | |||||||||
| Strain | WBStrain00040026 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (36) | |||||||||
| Paralog (48) | |||||||||
| Structured_description | Concise_description | nas-6 encodes an astacin-like metalloprotease. | Paper_evidence | WBPaper00006254 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 15 Feb 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable metalloendopeptidase activity. Involved in pharyngeal pumping and pharynx development. Predicted to be located in extracellular region. Expressed in body wall musculature; hyp7 syncytium; intestine; mc2; and pharyngeal muscle cell. Is an ortholog of human MEP1A (meprin A subunit alpha) and MEP1B (meprin A subunit beta). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | 4R79.1a | |||||||
| 4R79.1b | |||||||||
| Corresponding_CDS_history | 4R79.1:wp111 | ||||||||
| Corresponding_transcript | 4R79.1c | ||||||||
| 4R79.1a.1 | |||||||||
| 4R79.1b.1 | |||||||||
| Other_sequence | Oden_isotig20395 | ||||||||
| Tcol_isotig09337 | |||||||||
| Dviv_isotig08873 | |||||||||
| Dviv_isotig27754 | |||||||||
| Dviv_isotig08874 | |||||||||
| Tcol_isotig09336 | |||||||||
| Associated_feature | WBsf652431 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00027578 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00088965 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038588 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8909 | ||||||||
| Expr1013860 | |||||||||
| Expr1142796 | |||||||||
| Expr2013889 | |||||||||
| Expr2032129 | |||||||||
| Drives_construct | WBCnstr00013603 | ||||||||
| Construct_product | WBCnstr00013603 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (148) | |||||||||
| Interaction (28) | |||||||||
| Map_info | Map | IV | Position | 17.2001 | |||||
| Positive | Positive_clone | 4R79 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006254 | ||||||||
| WBPaper00035910 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064648 | |||||||||
| WBPaper00066305 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
