WormBase Tree Display for Gene: WBGene00003523
expand all nodes | collapse all nodes | view schema
WBGene00003523 | Evidence | Author_evidence | Moehrlen F | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C05D11 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nas | ||||||
Allele (55) | |||||||
Strain | WBStrain00035277 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (15) | |||||||
Ortholog (28) | |||||||
Paralog (48) | |||||||
Structured_description | Concise_description | nas-4 encodes a predicted extracellular matrix metalloprotease of the M12A (astacin) family that contains an N-terminal signal sequence and a catalytic domain, but no recognizable regulatory domains in the C-terminus; as loss of nas-4 activity via RNAi results in no obvious abnormalities, the precise role of NAS-4 in C. elegans development and/or behavior is not yet known; however, an NAS-4 translational reporter is expressed in the pharynx and intestine in larvae and adults, suggesting a role for NAS-4 in digestion; NAS-4 is specifically detected within cells of the pharyngeal procorpus, metacorpus, isthmus, and terminal bulb, with extracellular expression detected in the lumen of the terminal bulb and in the gut. | Paper_evidence | WBPaper00004403 | |||
WBPaper00005654 | |||||||
WBPaper00006254 | |||||||
WBPaper00024497 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 15 Nov 2004 00:00:00 | ||||||
Automated_description | Predicted to enable metalloendopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in extracellular region. Expressed in intestine; marginal cell; and pharynx. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C05D11.6a | |||||
C05D11.6b | |||||||
C05D11.6c | |||||||
Corresponding_CDS_history | C05D11.6:wp112 | ||||||
C05D11.6:wp127 | |||||||
Corresponding_transcript | C05D11.6a.1 | ||||||
C05D11.6a.2 | |||||||
C05D11.6b.1 | |||||||
C05D11.6c.1 | |||||||
Other_sequence | FC547268.1 | ||||||
JO469184.1 | |||||||
ACC23389_1 | |||||||
JI181768.1 | |||||||
CJC16588_1 | |||||||
Dviv_isotig26663 | |||||||
Associated_feature | WBsf992756 | ||||||
WBsf226811 | |||||||
WBsf226812 | |||||||
Experimental_info | RNAi_result | WBRNAi00028497 | Inferred_automatically | RNAi_primary | |||
WBRNAi00039738 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00005475 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00039739 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00088977 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00022273 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00005306 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram170 | ||||||
Expr2803 | |||||||
Expr7412 | |||||||
Expr8907 | |||||||
Expr1025181 | |||||||
Expr1143830 | |||||||
Expr2013887 | |||||||
Expr2032127 | |||||||
Drives_construct | WBCnstr00001207 | ||||||
WBCnstr00010956 | |||||||
WBCnstr00012555 | |||||||
WBCnstr00013601 | |||||||
WBCnstr00036072 | |||||||
Construct_product | WBCnstr00010956 | ||||||
WBCnstr00013601 | |||||||
WBCnstr00036072 | |||||||
Microarray_results (26) | |||||||
Expression_cluster (164) | |||||||
Interaction (44) | |||||||
Map_info | Map | III | Position | -1.28376 | Error | 0.000983 | |
Positive | Positive_clone | C05D11 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00006254 | ||||||
WBPaper00025850 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00058138 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |