WormBase Tree Display for Gene: WBGene00003523
expand all nodes | collapse all nodes | view schema
WBGene00003523 | Evidence | Author_evidence | Moehrlen F | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C05D11 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | nas-4 | Person_evidence | WBPerson1103 | |||||
Sequence_name | C05D11.6 | ||||||||
Molecular_name | C05D11.6a | ||||||||
C05D11.6a.1 | |||||||||
CE37080 | |||||||||
C05D11.6b | |||||||||
CE44904 | |||||||||
C05D11.6c | |||||||||
CE44965 | |||||||||
C05D11.6a.2 | |||||||||
C05D11.6b.1 | |||||||||
C05D11.6c.1 | |||||||||
Other_name | CELE_C05D11.6 | Accession_evidence | NDB | BX284603 | |||||
Public_name | nas-4 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nas | ||||||||
Allele (55) | |||||||||
Strain | WBStrain00035277 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00007781 | ||||||||
00007782 | |||||||||
00007783 | |||||||||
00007784 | |||||||||
00007785 | |||||||||
00007786 | |||||||||
00007787 | |||||||||
00007788 | |||||||||
00048504 | |||||||||
00048505 | |||||||||
00048506 | |||||||||
00110981 | |||||||||
00110982 | |||||||||
00110983 | |||||||||
00110984 | |||||||||
Ortholog (28) | |||||||||
Paralog (48) | |||||||||
Structured_description | Concise_description | nas-4 encodes a predicted extracellular matrix metalloprotease of the M12A (astacin) family that contains an N-terminal signal sequence and a catalytic domain, but no recognizable regulatory domains in the C-terminus; as loss of nas-4 activity via RNAi results in no obvious abnormalities, the precise role of NAS-4 in C. elegans development and/or behavior is not yet known; however, an NAS-4 translational reporter is expressed in the pharynx and intestine in larvae and adults, suggesting a role for NAS-4 in digestion; NAS-4 is specifically detected within cells of the pharyngeal procorpus, metacorpus, isthmus, and terminal bulb, with extracellular expression detected in the lumen of the terminal bulb and in the gut. | Paper_evidence | WBPaper00004403 | |||||
WBPaper00005654 | |||||||||
WBPaper00006254 | |||||||||
WBPaper00024497 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 15 Nov 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable metalloendopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in extracellular region. Expressed in intestine; marginal cell; and pharynx. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C05D11.6a | |||||||
C05D11.6b | |||||||||
C05D11.6c | |||||||||
Corresponding_CDS_history | C05D11.6:wp112 | ||||||||
C05D11.6:wp127 | |||||||||
Corresponding_transcript | C05D11.6a.1 | ||||||||
C05D11.6a.2 | |||||||||
C05D11.6b.1 | |||||||||
C05D11.6c.1 | |||||||||
Other_sequence | FC547268.1 | ||||||||
JO469184.1 | |||||||||
ACC23389_1 | |||||||||
JI181768.1 | |||||||||
CJC16588_1 | |||||||||
Dviv_isotig26663 | |||||||||
Associated_feature | WBsf992756 | ||||||||
WBsf226811 | |||||||||
WBsf226812 | |||||||||
Experimental_info | RNAi_result | WBRNAi00028497 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00039738 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00005475 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00039739 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00088977 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022273 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00005306 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram170 | ||||||||
Expr2803 | |||||||||
Expr7412 | |||||||||
Expr8907 | |||||||||
Expr1025181 | |||||||||
Expr1143830 | |||||||||
Expr2013887 | |||||||||
Expr2032127 | |||||||||
Drives_construct | WBCnstr00001207 | ||||||||
WBCnstr00010956 | |||||||||
WBCnstr00012555 | |||||||||
WBCnstr00013601 | |||||||||
WBCnstr00036072 | |||||||||
Construct_product | WBCnstr00010956 | ||||||||
WBCnstr00013601 | |||||||||
WBCnstr00036072 | |||||||||
Microarray_results (26) | |||||||||
Expression_cluster (164) | |||||||||
Interaction (44) | |||||||||
Map_info | Map | III | Position | -1.28376 | Error | 0.000983 | |||
Positive | Positive_clone | C05D11 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00006254 | ||||||||
WBPaper00025850 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00058138 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |