WormBase Tree Display for Gene: WBGene00003411
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| WBGene00003411 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | mrp-5 | Person_evidence | WBPerson490 | |||||
| Sequence_name | F14F4.3 | ||||||||
| Molecular_name | F14F4.3 | ||||||||
| F14F4.3.1 | |||||||||
| CE23650 | |||||||||
| Other_name | CELE_F14F4.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | mrp-5 | ||||||||
| DB_info | Database | AceView | gene | XP558 | |||||
| WormQTL | gene | WBGene00003411 | |||||||
| WormFlux | gene | WBGene00003411 | |||||||
| NDB | locus_tag | CELE_F14F4.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003411|UniProtKB=G5EE72 | |||||||
| family | PTHR24223 | ||||||||
| NCBI | gene | 181587 | |||||||
| RefSeq | protein | NM_078078.4 | |||||||
| SwissProt | UniProtAcc | G5EE72 | |||||||
| UniProt_GCRP | UniProtAcc | G5EE72 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mrp | ||||||||
| Allele (124) | |||||||||
| Strain | WBStrain00002784 | ||||||||
| WBStrain00036722 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00000477 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003407 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003408 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003409 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003410 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003412 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003414 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003413 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | The mrp-5 gene encodes a homolog of the human gene CFTR, which when mutated leads to cystic fibrosis (OMIM:219700). | Paper_evidence | WBPaper00004424 | |||||
| WBPaper00004637 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables ABC-type vitamin B12 transporter activity. Involved in cobalamin transport. Predicted to be located in membrane. Expressed in several structures, including body wall musculature; hypodermis; intestine; muscle cell; and pharynx. Human ortholog(s) of this gene implicated in pancreatic cancer. Is an ortholog of human ABCC12 (ATP binding cassette subfamily C member 12) and ABCC5 (ATP binding cassette subfamily C member 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:1793 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:56) | ||||
| Molecular_info | Corresponding_CDS | F14F4.3 | |||||||
| Corresponding_CDS_history | F14F4.3a:wp252 | ||||||||
| Corresponding_transcript | F14F4.3.1 | ||||||||
| Other_sequence (48) | |||||||||
| Associated_feature (16) | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00003311 | ||||||||
| WBCnstr00011353 | |||||||||
| WBCnstr00013720 | |||||||||
| WBCnstr00019478 | |||||||||
| WBCnstr00019480 | |||||||||
| WBCnstr00036131 | |||||||||
| Construct_product | WBCnstr00019479 | ||||||||
| WBCnstr00019480 | |||||||||
| WBCnstr00036131 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (188) | |||||||||
| Interaction (42) | |||||||||
| Map_info | Map | X | Position | 21.5778 | Error | 0.006227 | |||
| Positive | Positive_clone | F14F4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (20) | |||||||||
| Remark | Sequence connection from [Sheps JA, Baillie DL] [040902 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
