WormBase Tree Display for Gene: WBGene00003410
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| WBGene00003410 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | mrp-4 | Person_evidence | WBPerson490 | |||||
| Sequence_name | F21G4.2 | ||||||||
| Molecular_name | F21G4.2 | ||||||||
| F21G4.2.1 | |||||||||
| CE09548 | |||||||||
| Other_name | CELE_F21G4.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | mrp-4 | ||||||||
| DB_info | Database | AceView | gene | XK507 | |||||
| WormQTL | gene | WBGene00003410 | |||||||
| WormFlux | gene | WBGene00003410 | |||||||
| NDB | locus_tag | CELE_F21G4.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003410|UniProtKB=G5EFP3 | |||||||
| family | PTHR24223 | ||||||||
| NCBI | gene | 181202 | |||||||
| RefSeq | protein | NM_077257.6 | |||||||
| TREEFAM | TREEFAM_ID | TF105199 | |||||||
| TrEMBL | UniProtAcc | G5EFP3 | |||||||
| UniProt_GCRP | UniProtAcc | G5EFP3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mrp | ||||||||
| Allele (101) | |||||||||
| Strain | WBStrain00036002 | ||||||||
| WBStrain00007857 | |||||||||
| Component_of_genotype | WBGenotype00000070 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (86) | |||||||||
| Paralog | WBGene00000477 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003407 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003408 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003409 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003411 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003414 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003413 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003412 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | mrp-4 encodes a putative member of subfamily C of the ATP-binding cassette transporters; MRP-4 is required, redundantly with its paralog WHT-2, for sperm to normally migrate towards a PUFA-based signal exuded by oocytes; hermaphrodites subjected to double wht-2(RNAi) mrp-4(RNAi) are infertile, both through aberrant loss of their own sperm and through failure of males to effectively inseminate them; in mammalian eicosanoid signalling, subfamily C ABC transporters are required for PUFA and eicosanoid transport. | Paper_evidence | WBPaper00028527 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 19 Oct 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATPase-coupled transmembrane transporter activity. Involved in lipid transport involved in lipid storage and lysosome organization. Located in endocytic vesicle and gut granule. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F21G4.2 | |||||||
| Corresponding_transcript | F21G4.2.1 | ||||||||
| Other_sequence (86) | |||||||||
| Associated_feature | WBsf655202 | ||||||||
| WBsf663210 | |||||||||
| WBsf1006563 | |||||||||
| WBsf1006564 | |||||||||
| WBsf1023638 | |||||||||
| WBsf236210 | |||||||||
| WBsf236211 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00013700 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00007620 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086051 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045236 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090692 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00002018 | ||||||||
| WBCnstr00011862 | |||||||||
| WBCnstr00011863 | |||||||||
| WBCnstr00013061 | |||||||||
| WBCnstr00036132 | |||||||||
| WBCnstr00042507 | |||||||||
| Construct_product | WBCnstr00011863 | ||||||||
| WBCnstr00016464 | |||||||||
| WBCnstr00021411 | |||||||||
| WBCnstr00021413 | |||||||||
| WBCnstr00021417 | |||||||||
| WBCnstr00036132 | |||||||||
| WBCnstr00042507 | |||||||||
| Antibody | WBAntibody00001318 | ||||||||
| WBAntibody00001319 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (214) | |||||||||
| Interaction (64) | |||||||||
| Map_info | Map | X | Position | 1.73094 | Error | 7.7e-05 | |||
| Positive | Positive_clone | F21G4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (16) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
