WormBase Tree Display for Gene: WBGene00003333
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| WBGene00003333 | Evidence | Paper_evidence | WBPaper00005879 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPaper00005825 | |||||||||
| SMap | S_parent | Sequence | C34E11 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-239.2 | Person_evidence | WBPerson18 | |||||
| Sequence_name | C34E11.6 | ||||||||
| Molecular_name | C34E11.6 | ||||||||
| C34E11.6a | |||||||||
| C34E11.6b | |||||||||
| Other_name | mir-239b | Remark | miRBase V21 import | ||||||
| cel-mir-239b | Remark | miRBase V21 import | |||||||
| Cel-Mir-305-P2 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_C34E11.6 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | mir-239.2 | ||||||||
| DB_info | Database | miRBase | acc | MI0000315 | |||||
| SignaLink | mirna | cel-mir-239b | |||||||
| MirGeneDB | cel | Cel-Mir-305-P2 | |||||||
| NDB | locus_tag | CELE_C34E11.6 | |||||||
| NCBI | gene | 3565868 | |||||||
| RefSeq | protein | NR_002416.2 | |||||||
| RNAcentral | URSid | URS0000506BCE | |||||||
| URS0000587B0A | |||||||||
| URS00005BB985 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01499887 | ||||||||
| WBVar01499888 | |||||||||
| WBVar01499710 | |||||||||
| WBVar02123435 | |||||||||
| WBVar00518188 | |||||||||
| WBVar02123487 | |||||||||
| WBVar00323168 | |||||||||
| WBVar02123334 | |||||||||
| WBVar01498960 | |||||||||
| WBVar01500067 | |||||||||
| In_cluster | MIR-305 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-239.2 encodes a microRNA, a small non-protein coding RNA and appears to have a potential ortholog in C. briggsae; miR-239.2 is weakly expressed in the embryo and strongly expressed at all other stages of development in normal worms and in glp-4(bn2) mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes. | Paper_evidence | WBPaper00005825 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 08 Feb 2005 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including daf-12; eat-2; and prg-1 based on tiling array and RNA-seq studies. Is affected by graphene oxide; sodium arsenite; and paraquat based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | C34E11.6 | |||||||
| C34E11.6a | |||||||||
| C34E11.6b | |||||||||
| Associated_feature | WBsf1007113 | ||||||||
| WBsf1023937 | |||||||||
| Experimental_info | Expr_pattern | Expr2514 | |||||||
| Expr10921 | |||||||||
| Expression_cluster (36) | |||||||||
| Interaction | WBInteraction000500576 | ||||||||
| WBInteraction000500577 | |||||||||
| WBProcess | WBbiopr:00000001 | ||||||||
| Map_info | Positive | Inside_rearr | nDf62 | ||||||
| Positive_clone | C34E11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Mapping_data | Pos_neg_data | 10936 | |||||||
| Interpolated_map_position | X | 6.72588 | |||||||
| Reference | WBPaper00005825 | ||||||||
| WBPaper00024441 | |||||||||
| WBPaper00031335 | |||||||||
| WBPaper00035664 | |||||||||
| WBPaper00037855 | |||||||||
| WBPaper00039808 | |||||||||
| WBPaper00039813 | |||||||||
| WBPaper00054944 | |||||||||
| WBPaper00066207 | |||||||||
| Method | Gene |
