WormBase Tree Display for Gene: WBGene00003284
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| WBGene00003284 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F09A5 | ||||||
| Identity | Version | 3 | |||||||
| Name | CGC_name | mir-56 | Person_evidence | WBPerson18 | |||||
| Sequence_name | F09A5.8 | ||||||||
| Molecular_name | F09A5.8 | ||||||||
| F09A5.8a | |||||||||
| F09A5.8b | |||||||||
| Other_name | cel-mir-56 | Remark | miRBase V21 import | ||||||
| Cel-Mir-54-P3 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_F09A5.8 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | mir-56 | ||||||||
| DB_info | Database | miRBase | acc | MI0000027 | |||||
| SignaLink | mirna | cel-mir-56 | |||||||
| MirGeneDB | cel | Cel-Mir-54-P3 | |||||||
| NDB | locus_tag | CELE_F09A5.8 | |||||||
| NCBI | gene | 259898 | |||||||
| RefSeq | protein | NR_001266.2 | |||||||
| RNAcentral | URSid | URS00002575E8 | |||||||
| URS0000374B7C | |||||||||
| URS0000784E40 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 23 May 2008 16:38:49 | WBPerson2970 | Name_change | CGC_name | mir-56 transferred to WBGene00044108 | ||||
| 3 | 25 Feb 2010 16:35:05 | WBPerson1983 | Event | Acquires_merge | WBGene00044108 | ||||
| Name_change | CGC_name | mir-56 | |||||||
| Acquires_merge | WBGene00044108 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01499887 | ||||||||
| WBVar01499519 | |||||||||
| WBVar01499888 | |||||||||
| WBVar02151615 | |||||||||
| WBVar01499710 | |||||||||
| WBVar00323164 | |||||||||
| WBVar01199479 | |||||||||
| WBVar01498960 | |||||||||
| WBVar01500067 | |||||||||
| In_cluster | MIR-54 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00106240 | ||||||||
| Structured_description | Automated_description | Predicted to be involved in RNA destabilization. Expressed in several structures, including excretory system; hypodermis; neurons; and seam cell. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | F09A5.8 | |||||||
| F09A5.8a | |||||||||
| F09A5.8b | |||||||||
| Other_sequence | AJ487580 | ||||||||
| Gene_product_binds | WBsf047546 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00113349 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr2486 | ||||||||
| Expr8459 | |||||||||
| Expr8594 | |||||||||
| Expr9259 | |||||||||
| Expr10911 | |||||||||
| Drives_construct | WBCnstr00005533 | ||||||||
| WBCnstr00006501 | |||||||||
| WBCnstr00013387 | |||||||||
| WBCnstr00013856 | |||||||||
| WBCnstr00013857 | |||||||||
| WBCnstr00013858 | |||||||||
| Expression_cluster (32) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Positive | Inside_rearr | nDf58 | ||||||
| Positive_clone | F09A5 | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Pos_neg_data | 10929 | |||||||
| Interpolated_map_position | X | 10.2145 | |||||||
| Reference (13) | |||||||||
| Remark | This mir gene has two functional elements encoded on either side of the stemloop structure. I.e. both genes undergo base pairing with each other in the formation of the stem-loop. The 3' gene is likely to be the predominant form, the 5' gene is also known as mir-56-star [040701 krb] | ||||||||
| [100225 pad] Transferred the mir-56 designation back to this gene as the Sequence curator kept the major mature transcript as the live gene and so all mir-data had to be transferred back to this gene ID. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
