WormBase Tree Display for Gene: WBGene00003284
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WBGene00003284 | Evidence | Paper_evidence | WBPaper00004928 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F09A5 | ||||
Identity | Version | 3 | |||||
Name | CGC_name | mir-56 | Person_evidence | WBPerson18 | |||
Sequence_name | F09A5.8 | ||||||
Molecular_name | F09A5.8 | ||||||
F09A5.8a | |||||||
F09A5.8b | |||||||
Other_name | cel-mir-56 | Remark | miRBase V21 import | ||||
Cel-Mir-54-P3 | Remark | MirGeneDB 2.1 import | |||||
CELE_F09A5.8 | Accession_evidence | NDB | BX284606 | ||||
Public_name | mir-56 | ||||||
DB_info | Database | miRBase | acc | MI0000027 | |||
SignaLink | mirna | cel-mir-56 | |||||
MirGeneDB | cel | Cel-Mir-54-P3 | |||||
NDB | locus_tag | CELE_F09A5.8 | |||||
NCBI | gene | 259898 | |||||
RefSeq | protein | NR_001266.2 | |||||
RNAcentral | URSid | URS00002575E8 | |||||
URS0000374B7C | |||||||
URS0000784E40 | |||||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001265 | |||||
Gene_class | mir | ||||||
Allele | WBVar01499887 | ||||||
WBVar01499519 | |||||||
WBVar01499888 | |||||||
WBVar02151615 | |||||||
WBVar01499710 | |||||||
WBVar00323164 | |||||||
WBVar01199479 | |||||||
WBVar01498960 | |||||||
WBVar01500067 | |||||||
In_cluster | MIR-54 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00106240 | ||||||
Structured_description | Automated_description | Predicted to be involved in RNA destabilization. Expressed in several structures, including excretory system; hypodermis; neurons; and seam cell. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_transcript | F09A5.8 | |||||
F09A5.8a | |||||||
F09A5.8b | |||||||
Other_sequence | AJ487580 | ||||||
Gene_product_binds | WBsf047546 | ||||||
Experimental_info | RNAi_result | WBRNAi00113349 | Inferred_automatically | RNAi_primary | |||
Expr_pattern | Expr2486 | ||||||
Expr8459 | |||||||
Expr8594 | |||||||
Expr9259 | |||||||
Expr10911 | |||||||
Drives_construct | WBCnstr00005533 | ||||||
WBCnstr00006501 | |||||||
WBCnstr00013387 | |||||||
WBCnstr00013856 | |||||||
WBCnstr00013857 | |||||||
WBCnstr00013858 | |||||||
Expression_cluster (32) | |||||||
Interaction (14) | |||||||
Map_info | Positive | Inside_rearr | nDf58 | ||||
Positive_clone | F09A5 | Inferred_automatically | From CDS info | ||||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Pos_neg_data | 10929 | |||||
Interpolated_map_position | X | 10.2145 | |||||
Reference (13) | |||||||
Remark | This mir gene has two functional elements encoded on either side of the stemloop structure. I.e. both genes undergo base pairing with each other in the formation of the stem-loop. The 3' gene is likely to be the predominant form, the 5' gene is also known as mir-56-star [040701 krb] | ||||||
[100225 pad] Transferred the mir-56 designation back to this gene as the Sequence curator kept the major mature transcript as the live gene and so all mir-data had to be transferred back to this gene ID. | Curator_confirmed | WBPerson1983 | |||||
Method | Gene |