WormBase Tree Display for Gene: WBGene00003283
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| WBGene00003283 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F09A5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-55 | Person_evidence | WBPerson18 | |||||
| Sequence_name | F09A5.6 | ||||||||
| Molecular_name | F09A5.6 | ||||||||
| F09A5.6a | |||||||||
| F09A5.6b | |||||||||
| Other_name | cel-mir-55 | Remark | miRBase V21 import | ||||||
| Cel-Mir-54-P2 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_F09A5.6 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | mir-55 | ||||||||
| DB_info | Database | miRBase | acc | MI0000026 | |||||
| SignaLink | mirna | cel-mir-55 | |||||||
| MirGeneDB | cel | Cel-Mir-54-P2 | |||||||
| NDB | locus_tag | CELE_F09A5.6 | |||||||
| NCBI | gene | 259896 | |||||||
| RefSeq | protein | NR_001264.2 | |||||||
| RNAcentral | URSid | URS0000226147 | |||||||
| URS00002DF027 | |||||||||
| URS000058CC12 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele (11) | |||||||||
| Strain | WBStrain00027486 | ||||||||
| In_cluster | MIR-54 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-55 encodes a microRNA (miRNA), a small noncoding RNA that is likely involved in post-transcriptional regulation of gene expression; miR-55 is expressed at high levels during all developmental stages and in glp-4 mutant hermaphrodites lacking a germline; miR-55 is also detected in him-8 mutants, starved L1 larvae, and dauer larvae; miR-55 does not appear to have orthologs in other species, and the targets of miR-55 are not yet known. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00005825 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Expressed in several structures, including excretory system; hypodermis; neurons; and seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | F09A5.6 | |||||||
| F09A5.6a | |||||||||
| F09A5.6b | |||||||||
| Other_sequence | AJ487579 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00113349 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr2485 | ||||||||
| Expr8594 | |||||||||
| Expr9258 | |||||||||
| Expr10910 | |||||||||
| Drives_construct | WBCnstr00006501 | ||||||||
| WBCnstr00013387 | |||||||||
| WBCnstr00013856 | |||||||||
| WBCnstr00013857 | |||||||||
| WBCnstr00013858 | |||||||||
| Expression_cluster (22) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Positive | Inside_rearr | nDf45 | ||||||
| nDf58 | |||||||||
| Positive_clone | F09A5 | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Pos_neg_data | 10908 | |||||||
| 10928 | |||||||||
| Interpolated_map_position | X | 10.2145 | |||||||
| Reference | WBPaper00004927 | ||||||||
| WBPaper00005825 | |||||||||
| WBPaper00025930 | |||||||||
| WBPaper00031335 | |||||||||
| WBPaper00032188 | |||||||||
| WBPaper00032927 | |||||||||
| WBPaper00035664 | |||||||||
| WBPaper00036127 | |||||||||
| WBPaper00043989 | |||||||||
| WBPaper00059873 | |||||||||
| Method | Gene |
