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WormBase Tree Display for Gene: WBGene00003243

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Name Class

WBGene00003243SMapS_parentSequenceF10E9
IdentityVersion1
NameCGC_namemig-10Person_evidenceWBPerson261
Sequence_nameF10E9.6
Molecular_name (11)
Other_nameCELE_F10E9.6Accession_evidenceNDBBX284603
Public_namemig-10
DB_infoDatabaseAceViewgene3J395
WormQTLgeneWBGene00003243
WormFluxgeneWBGene00003243
NDBlocus_tagCELE_F10E9.6
PanthergeneCAEEL|WormBase=WBGene00003243|UniProtKB=P34400
familyPTHR11243
NCBIgene176168
RefSeqproteinNM_001379826.1
NM_066420.6
NM_001382935.2
SwissProtUniProtAccP34400
TREEFAMTREEFAM_IDTF317511
UniProt_GCRPUniProtAccP34400
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:31WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmig
Allele (291)
Possibly_affected_byWBVar02157219
Legacy_information[C.elegansII] ct41 : incomplete CAN, HSN, ALM migrations; shortened excretory canals; additional defects. Mosaic analysis indicates non-autonomy, possible hypodermal focus. OA1: e2527. Cloned: encodes predicted 650 aa protein with similarity to human Grb7, Grb10, including pleckstrin homology domain. [Desai et al. 1988; LK]
StrainWBStrain00001485
WBStrain00002915
WBStrain00003479
WBStrain00033874
WBStrain00032605
WBStrain00003959
WBStrain00051958
RNASeq_FPKM (74)
GO_annotation (27)
OrthologWBGene00054743Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00036525Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00150351Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00133170Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00092713Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00223537Brugia malayiFrom_analysisWormBase-Compara
CSP21.g6818Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g21808Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g16488Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g23861Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g6550Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2603Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7585Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g4483Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g8243Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00154.g5751Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-mig-10Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00188.g6610Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22037Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_009796Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11638Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g15420Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30234920Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8356Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00177328Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00246035Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00260115Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288946Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0261811Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
ZFIN:ZDB-GENE-040426-1318Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-070912-156Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-090311-54Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
HGNC:17379Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
HGNC:14436Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1861354Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
MGI:1924550Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1304795Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:1308387Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptionmig-10 encodes proteins that contain, from N- to C-terminus, an RA-like (Ras association) domain, a PH (pleckstrin homology) domain, and a proline-rich motif, and that are homologous to the vertebrate RIAM, lamellopodin, and Grb7, Grb10, and Grb14 cytoplasmic adaptor proteins; during development, mig-10 activity is required for cell migration and for outgrowth of axons and excretory cell canals; in regulating axon outgrowth, MIG-10 likely functions downstream of UNC-6/Netrin and SLT-1/Slit and in concert with UNC-34, with which it interacts in vitro; MIG-10 also physically interacts with ABI-1 (Abelson interactor-1); mig-10::gfp reporter fusions are expressed in neurons as well as in pharyngeal and intestinal tissue; when expressed in tissue culture cells, a MIG-10::GFP fusion protein colocalizes with F-actin and promotes lamellipodia formation.Paper_evidenceWBPaper00001304
WBPaper00002766
WBPaper00027185
WBPaper00027328
WBPaper00041596
Curator_confirmedWBPerson1843
Date_last_updated13 Nov 2012 00:00:00
Automated_descriptionEnables SH3 domain binding activity. Involved in several processes, including cell migration; cell projection organization; and egg-laying behavior. Located in neuronal cell body membrane; plasma membrane bounded cell projection; and presynaptic cytosol. Part of filamentous actin. Expressed in hermaphrodite gonad; neurons; and tail. Is an ortholog of human RAPH1 (Ras association (RalGDS/AF-6) and pleckstrin homology domains 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF10E9.6a
F10E9.6b
F10E9.6c
Corresponding_CDS_historyF10E9.6a:wp113
F10E9.6b:wp113
Corresponding_transcriptF10E9.6a.1
F10E9.6a.2
F10E9.6a.3
F10E9.6b.1
F10E9.6c.1
Other_sequence (28)
Associated_feature (66)
Experimental_infoRNAi_result (22)
Expr_pattern (27)
Drives_constructWBCnstr00001004
WBCnstr00003428
WBCnstr00004230
WBCnstr00011701
WBCnstr00013113
WBCnstr00016488
WBCnstr00017477
WBCnstr00017478
WBCnstr00017479
Construct_product (12)
Microarray_results (45)
Expression_cluster (181)
Interaction (65)
Anatomy_functionWBbtf0493
WBbtf0494
WBbtf0815
Map_infoMapIIIPosition-0.346394Error0.001792
Well_ordered
PositivePositive_cloneF10E9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point (11)
Pos_neg_data4231
4232
4975
Reference (58)
MethodGene