WormBase Tree Display for Gene: WBGene00003180
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| WBGene00003180 | SMap | S_parent | Sequence | T24D3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | med-1 | Person_evidence | WBPerson539 | |||||
| Sequence_name | T24D3.1 | ||||||||
| Molecular_name | T24D3.1 | ||||||||
| T24D3.1.1 | |||||||||
| CE35028 | |||||||||
| Other_name | CELE_T24D3.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | med-1 | ||||||||
| DB_info | Database | AceView | gene | XN49 | |||||
| WormQTL | gene | WBGene00003180 | |||||||
| WormFlux | gene | WBGene00003180 | |||||||
| NDB | locus_tag | CELE_T24D3.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003180|UniProtKB=G5EF71 | |||||||
| family | PTHR10071 | ||||||||
| NCBI | gene | 191705 | |||||||
| RefSeq | protein | NM_001381117.1 | |||||||
| TREEFAM | TREEFAM_ID | TF322836 | |||||||
| TrEMBL | UniProtAcc | G5EF71 | |||||||
| UniProt_GCRP | UniProtAcc | G5EF71 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | med | ||||||||
| Allele (15) | |||||||||
| Strain | WBStrain00022739 | ||||||||
| WBStrain00022752 | |||||||||
| WBStrain00035070 | |||||||||
| WBStrain00035084 | |||||||||
| WBStrain00001575 | |||||||||
| WBStrain00031641 | |||||||||
| WBStrain00037381 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (22) | |||||||||
| Paralog | WBGene00003181 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | med-1 encodes a GATA-type transcription factor; med-1 is an immediate target of maternal SKN-1 and, in the early embryo, participates in specifying the mesendoderm; MED-1 functions upstream of the END-1 and END-3 GATA-type transcription factors in endodermal cell fate specification. | Paper_evidence | WBPaper00004636 | |||||
| WBPaper00026622 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 26 Jan 2012 00:00:00 | ||||||||
| Automated_description | Enables sequence-specific DNA binding activity. Involved in endodermal cell fate specification and pharynx development. Located in nucleus. Expressed in several structures, including MSaaaap; MSaapap; MSappp; MSppapa; and MSppapp. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T24D3.1 | |||||||
| Corresponding_CDS_history | T24D3.1:wp106 | ||||||||
| Corresponding_transcript | T24D3.1.1 | ||||||||
| Associated_feature | WBsf648614 | ||||||||
| WBsf978489 | |||||||||
| Gene_product_binds | WBsf034238 | ||||||||
| WBsf034239 | |||||||||
| WBsf034240 | |||||||||
| WBsf034241 | |||||||||
| WBsf034242 | |||||||||
| WBsf034243 | |||||||||
| Transcription_factor | WBTranscriptionFactor000112 | ||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Chronogram191 | ||||||||
| Expr883 | |||||||||
| Expr884 | |||||||||
| Expr3977 | |||||||||
| Expr4000 | |||||||||
| Expr7680 | |||||||||
| Expr1157591 | |||||||||
| Expr1200359 | |||||||||
| Expr2013505 | |||||||||
| Expr2031739 | |||||||||
| Drives_construct (11) | |||||||||
| Construct_product | WBCnstr00005050 | ||||||||
| WBCnstr00006396 | |||||||||
| WBCnstr00016790 | |||||||||
| WBCnstr00036191 | |||||||||
| WBCnstr00041446 | |||||||||
| Microarray_results (11) | |||||||||
| Expression_cluster (21) | |||||||||
| Interaction (79) | |||||||||
| Map_info | Map | X | Position | 7.07152 | Error | 0.012789 | |||
| Positive | Positive_clone | T24D3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (67) | |||||||||
| Remark | sequence from [Maduro MF, Rothman JH] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
