WormBase Tree Display for Gene: WBGene00003092
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WBGene00003092 | SMap | S_parent | Sequence | Y22F5A | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lys | ||||||
Allele (22) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00104644 | ||||||
00104645 | |||||||
00104646 | |||||||
00104647 | |||||||
00104648 | |||||||
Ortholog (23) | |||||||
Paralog (9) | |||||||
Structured_description | Concise_description | lys-3 encodes one of a family of ten C. elegans lysozyme genes that are homologous to lysozymes in the amoeboid protozoan Entamoeba histolytica; lys-3 expression is upregulated in response to stress; lys-3 activity is required for the stress response to copper ion, and in response to copper ion stress, lys-3 expression is upregulated in a kgb-1-dependent manner. | Paper_evidence | WBPaper00005382 | |||
WBPaper00042067 | |||||||
Curator_confirmed | WBPerson48 | ||||||
WBPerson1843 | |||||||
Date_last_updated | 29 Jan 2015 00:00:00 | ||||||
Automated_description | Involved in stress response to copper ion. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y22F5A.6 | |||||
Corresponding_transcript | Y22F5A.6.1 | ||||||
Other_sequence | CJC08899_1 | ||||||
PSC01678_1 | |||||||
Acan_isotig12256 | |||||||
Tcol_isotig25082 | |||||||
EX008801.1 | |||||||
GW408393.1 | |||||||
Associated_feature | WBsf652979 | ||||||
WBsf234364 | |||||||
WBsf234365 | |||||||
Experimental_info | RNAi_result | WBRNAi00075996 | Inferred_automatically | RNAi_primary | |||
WBRNAi00036715 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00020124 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00055693 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1010423 | ||||||
Expr1159219 | |||||||
Expr2013314 | |||||||
Expr2031545 | |||||||
Drives_construct | WBCnstr00036236 | ||||||
Construct_product | WBCnstr00036236 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (300) | |||||||
Interaction (116) | |||||||
Map_info | Map | V | Position | 2.4531 | Error | 0.000632 | |
Positive | Positive_clone | Y22F5A | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00005382 | ||||||
WBPaper00006437 | |||||||
WBPaper00024209 | |||||||
WBPaper00029437 | |||||||
WBPaper00031802 | |||||||
WBPaper00042067 | |||||||
WBPaper00061115 | |||||||
WBPaper00065331 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |