WormBase Tree Display for Gene: WBGene00003081
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| WBGene00003081 | Evidence | Person_evidence | WBPerson1846 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK593 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | lsm-7 | |||||||
| Sequence_name | ZK593.7 | ||||||||
| Molecular_name | ZK593.7 | ||||||||
| ZK593.7.1 | |||||||||
| CE06628 | |||||||||
| Other_name | CELE_ZK593.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | lsm-7 | ||||||||
| DB_info | Database | AceView | gene | 4L699 | |||||
| WormQTL | gene | WBGene00003081 | |||||||
| WormFlux | gene | WBGene00003081 | |||||||
| NDB | locus_tag | CELE_ZK593.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003081|UniProtKB=Q23543 | |||||||
| family | PTHR10553 | ||||||||
| NCBI | gene | 177988 | |||||||
| RefSeq | protein | NM_069633.6 | |||||||
| TREEFAM | TREEFAM_ID | TF314385 | |||||||
| TrEMBL | UniProtAcc | Q23543 | |||||||
| UniProt_GCRP | UniProtAcc | Q23543 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lsm | ||||||||
| Allele (19) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00004920 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of Lsm1-7-Pat1 complex and ribonucleoprotein complex. Is an ortholog of human LSM7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK593.7 | |||||||
| Corresponding_transcript | ZK593.7.1 | ||||||||
| Other_sequence (42) | |||||||||
| Associated_feature | WBsf229066 | ||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Expr1021213 | ||||||||
| Expr1031456 | |||||||||
| Expr1162946 | |||||||||
| Expr2013294 | |||||||||
| Expr2031525 | |||||||||
| Drives_construct | WBCnstr00036244 | ||||||||
| Construct_product | WBCnstr00036244 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (95) | |||||||||
| Interaction (260) | |||||||||
| Map_info | Map | IV | Position | 4.75256 | Error | 0.000968 | |||
| Positive | Positive_clone | ZK593 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025139 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046572 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059527 | |||||||||
| WBPaper00065026 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
