WormBase Tree Display for Gene: WBGene00003080
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| WBGene00003080 | Evidence | Person_evidence | WBPerson1846 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y71G12B | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | lsm-6 | |||||||
| Sequence_name | Y71G12B.14 | ||||||||
| Molecular_name | Y71G12B.14 | ||||||||
| Y71G12B.14.1 | |||||||||
| CE22886 | |||||||||
| Other_name | CELE_Y71G12B.14 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | lsm-6 | ||||||||
| DB_info | Database | AceView | gene | 1C175 | |||||
| WormQTL | gene | WBGene00003080 | |||||||
| WormFlux | gene | WBGene00003080 | |||||||
| NDB | locus_tag | CELE_Y71G12B.14 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003080|UniProtKB=Q95XN6 | |||||||
| family | PTHR11021 | ||||||||
| NCBI | gene | 190601 | |||||||
| RefSeq | protein | NM_001392965.1 | |||||||
| TREEFAM | TREEFAM_ID | TF313751 | |||||||
| TrEMBL | UniProtAcc | Q95XN6 | |||||||
| UniProt_GCRP | UniProtAcc | Q95XN6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lsm | ||||||||
| Allele (16) | |||||||||
| Strain | WBStrain00027114 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (24) | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00004918 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and maturation of SSU-rRNA. Predicted to be located in P-body and nucleolus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U6 snRNP; and sno(s)RNA-containing ribonucleoprotein complex. Expressed in body wall musculature; hermaphrodite somatic gonadal cell; and muscle cell. Is an ortholog of human LSM6 (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y71G12B.14 | |||||||
| Corresponding_transcript | Y71G12B.14.1 | ||||||||
| Other_sequence (50) | |||||||||
| Associated_feature | WBsf643058 | ||||||||
| WBsf982740 | |||||||||
| WBsf1009243 | |||||||||
| WBsf217237 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1566 | ||||||||
| Expr2638 | |||||||||
| Expr1020812 | |||||||||
| Expr1031455 | |||||||||
| Expr1161617 | |||||||||
| Expr2013293 | |||||||||
| Expr2031524 | |||||||||
| Drives_construct | WBCnstr00005177 | ||||||||
| Antibody | WBAntibody00000116 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (114) | |||||||||
| Interaction (164) | |||||||||
| Map_info | Map | I | Position | -13.2992 | Error | 0.032018 | |||
| Positive | Positive_clone | Y71G12B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00046572 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059527 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
