WormBase Tree Display for Gene: WBGene00003064
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| WBGene00003064 | Evidence | Paper_evidence | WBPaper00005707 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R10H10 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | nfu-1 | Person_evidence | WBPerson205 | |||||
| Author_evidence | P. Kropp | ||||||||
| Sequence_name | R10H10.1 | ||||||||
| Molecular_name | R10H10.1 | ||||||||
| R10H10.1.1 | |||||||||
| CE53043 | |||||||||
| Other_name | ldp-8 | ||||||||
| CELE_R10H10.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | nfu-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 19 Apr 2021 01:27:01 | WBPerson1983 | Name_change | CGC_name | nfu-1 | ||||
| Other_name | ldp-8 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nfu | ||||||||
| Allele (21) | |||||||||
| Possibly_affected_by | WBVar02157210 | ||||||||
| WBVar02157211 | |||||||||
| WBVar02157212 | |||||||||
| WBVar02157213 | |||||||||
| WBVar02157214 | |||||||||
| WBVar02157215 | |||||||||
| WBVar02158607 | |||||||||
| Strain | WBStrain00049819 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00073274 | ||||||||
| 00073275 | |||||||||
| 00073276 | |||||||||
| 00073277 | |||||||||
| 00073278 | |||||||||
| 00073279 | |||||||||
| 00073280 | |||||||||
| 00110539 | |||||||||
| 00110540 | |||||||||
| 00110541 | |||||||||
| Contained_in_operon | CEOP4376 | ||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | lpd-8 encodes a homolog of human and mouse HIRA-interacting protein-5; LPD-8 has C-terminal similarity to a domain of NifU observed in thioredoxin-like proteins and domains (COG0694), and is predicted to be mitochondrial on phylogenetic grounds. | Paper_evidence | WBPaper00004133 | |||||
| WBPaper00004424 | |||||||||
| WBPaper00012874 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable 4 iron, 4 sulfur cluster binding activity and iron ion binding activity. Involved in lipid storage. Predicted to be located in mitochondrion. Used to study multiple mitochondrial dysfunctions syndrome 1. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 1. Is an ortholog of human NFU1 (NFU1 iron-sulfur cluster scaffold). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:0080133 | Homo sapiens | Paper_evidence | WBPaper00061852 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 18 Jan 2022 00:00:00 | ||||||||
| Potential_model | DOID:0080133 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16287) | |||||
| Models_disease_asserted | WBDOannot00001084 | ||||||||
| WBDOannot00001085 | |||||||||
| WBDOannot00001086 | |||||||||
| WBDOannot00001087 | |||||||||
| WBDOannot00001088 | |||||||||
| WBDOannot00001089 | |||||||||
| Molecular_info | Corresponding_CDS | R10H10.1 | |||||||
| Corresponding_CDS_history | R10H10.1:wp270 | ||||||||
| Corresponding_transcript | R10H10.1.1 | ||||||||
| Other_sequence (43) | |||||||||
| Associated_feature | WBsf228988 | ||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr1014575 | ||||||||
| Expr1031442 | |||||||||
| Expr1155403 | |||||||||
| Expr2013255 | |||||||||
| Expr2031486 | |||||||||
| Drives_construct | WBCnstr00036253 | ||||||||
| Construct_product | WBCnstr00036253 | ||||||||
| WBCnstr00042900 | |||||||||
| WBCnstr00042901 | |||||||||
| WBCnstr00042902 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (104) | |||||||||
| Interaction (49) | |||||||||
| WBProcess | WBbiopr:00000121 | ||||||||
| Map_info | Map | IV | Position | 4.57979 | Error | 0.000279 | |||
| Positive | Positive_clone | R10H10 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
