WormBase Tree Display for Gene: WBGene00003062

WBGene00003062 Evidence: Paper_evidence: WBPaper00005707
  SMap: S_parent: Sequence: K09H9
  Identity: Version: 1
    Name: CGC_name: lpd-6 Person_evidence: WBPerson545
      Sequence_name: K09H9.6
      Molecular_name: K09H9.6
        K09H9.6.1
        CE37030
      Other_name: CELE_K09H9.6 Accession_evidence: NDB BX284601
      Public_name: lpd-6
    DB_info: Database: AceView gene 1D714
        WormQTL gene WBGene00003062
        WormFlux gene WBGene00003062
        NDB locus_tag CELE_K09H9.6
        Panther gene CAEEL|WormBase=WBGene00003062|UniProtKB=O44991
          family PTHR12661
        NCBI gene 171886
        RefSeq protein NM_058707.6
        TREEFAM TREEFAM_ID TF318923
        TrEMBL UniProtAcc O44991
        UniProt_GCRP UniProtAcc O44991
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lpd
    Allele (63)
    Strain: WBStrain00051139
    RNASeq_FPKM (74)
    GO_annotation: 00033745
      00033746
      00033747
      00033748
      00110535
      00110536
    Ortholog: WBGene00057093 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00026904 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
      WBGene00057126 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00142442 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00216109 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00136750 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00225226 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12140 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g5420 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g2494 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g7886 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g4881 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g9772 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g16908 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21206 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g10535 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g2332 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Cang_2012_03_13_00046.g2458 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-lpd-6 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold627.g6921 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00856.g16142 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17268 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000879 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g06710 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g14175 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10150700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g464 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237778 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00274325 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00274326 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258726 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00287508 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002720 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      SGD:S000001108 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0010770 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030114-4 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:9227 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:33526 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2178445 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1306325 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00050926 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
      WBGene00044219 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
      WBGene00023323 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
      WBGene00013589 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
    Structured_description: Concise_description: lpd-6 encodes a predicted rRNA-binding protein that is orthologous to Drosophila Peter Pan and the Saccharomyces cerevisiae SSF1 and SSF2 proteins that are required for ribosomal large subunit maturation; loss of lpd-6 activity via RNAi indicates that, in C. elegans, LPD-6 is required for fat storage and for larval growth and development; based upon its similarity to yeast SSF1 and SSF2, LPD-6 is predicted to be a nucleolar protein. Paper_evidence: WBPaper00005707
            WBPaper00028610
          Curator_confirmed: WBPerson1843
          Date_last_updated: 06 Nov 2006 00:00:00
      Automated_description: Predicted to enable rRNA binding activity. Involved in lipid storage. Predicted to be located in membrane. Predicted to be part of preribosome, large subunit precursor. Is an ortholog of human PPAN (peter pan homolog) and PPAN-P2RY11 (PPAN-P2RY11 readthrough). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K09H9.6
    Corresponding_CDS_history: K09H9.6:wp126
    Corresponding_transcript: K09H9.6.1
    Other_sequence (46)
    Associated_feature: WBsf649009
      WBsf219097
  Experimental_info: RNAi_result (13)
    Expr_pattern: Expr1021591
      Expr1031440
      Expr1154178
      Expr2013253
      Expr2031484
    Drives_construct: WBCnstr00036254
    Construct_product: WBCnstr00036254
    Microarray_results (19)
    Expression_cluster (130)
    Interaction (254)
    WBProcess: WBbiopr:00000121
  Map_info: Map: I Position: -4.47544 Error: 0.000279
    Positive: Positive_clone: K09H9 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005707
    WBPaper00029292
    WBPaper00038491
    WBPaper00055090
    WBPaper00064339
    WBPaper00064663
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene