WormBase Tree Display for Gene: WBGene00002992
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WBGene00002992 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | lin-3 | Person_evidence | WBPerson261 | |||||
Sequence_name | F36H1.4 | ||||||||
Molecular_name (27) | |||||||||
Other_name | let-94 | ||||||||
sli-4 | Paper_evidence | WBPaper00028495 | |||||||
Person_evidence | WBPerson625 | ||||||||
CELE_F36H1.4 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | lin-3 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 05 Oct 2006 10:39:45 | WBPerson2970 | Name_change | Other_name | sli-4 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lin | ||||||||
Reference_allele | WBVar00143992 | ||||||||
Allele (126) | |||||||||
Legacy_information | e1417 : adult hermaphrodite vulvaless (penetrance 89%); HME2; adult male wildtype ME2. NA4 (n378 (resembles e1417); n1059 (early larval lethal); n1058 (early larval lethal/sterile adult ME3)). | ||||||||
See also e1417, n378, n1058, n1059, s751, s1263, s1750 | |||||||||
[C.elegansII] e1417 : adult hermaphrodite vulvaless (penetrance 89%); HME2; adult male wildtype ME2. OA>10: n378 (resembles e1417)d,; n1059 (early larval lethal), n1058 (early larval lethal/sterile adult),s751 (pka let-94, late larval lethal, s751/Df early larval lethal), s1750 (homozygote and hemizygote mid larval lethal), etc. Cloned: encodes proteins with similarity to EGF family. Transgene overexpression leads to Muv(extra vulval differentiation). [Hill and Sternberg 1992; BC; MT; PS] | |||||||||
Strain (13) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (32) | |||||||||
Ortholog | WBGene00062517 | Caenorhabditis remanei | From_analysis | OMA | |||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00028342 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00073765 | Caenorhabditis remanei | From_analysis | OMA | ||||||
TreeFam | |||||||||
WormBase-Compara | |||||||||
WBGene00194764 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00137315 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
CBOVI.g8364 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP26.g16045 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g2195 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g23770 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g2168 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g17900 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g12930 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g4410 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g17298 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-lin-3 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g8017 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00007.g471 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_12833 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_014044 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Sp34_40312400 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrIV_pilon.g11753 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | lin-3 encodes a member of the EGF family of peptide growth factors that affects induction of vulval development, viability, ovulation, behavioral quiescence after stress, and male spicule development; it acts genetically upstream of its presumptive receptor let-23, and is expressed in multiple locations consistent with it acting as a localized ligand; for example, the anchor cell of the developing gonad, which induces vulval development. | Paper_evidence | WBPaper00000496 | |||||
WBPaper00001573 | |||||||||
WBPaper00045813 | |||||||||
WBPaper00002043 | |||||||||
Person_evidence | WBPerson625 | ||||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 13 Jul 2015 00:00:00 | ||||||||
Automated_description | Enables receptor ligand activity. Involved in several processes, including positive regulation of ovulation; positive regulation of vulval development; and reproductive process. Located in plasma membrane. Expressed in several structures, including excretory canal; germ line; hermaphrodite gonad; rectal epithelial cell; and vulF. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F36H1.4a | |||||||
F36H1.4b | |||||||||
F36H1.4c | |||||||||
F36H1.4d | |||||||||
F36H1.4e | |||||||||
F36H1.4f | |||||||||
F36H1.4g | |||||||||
F36H1.4h | |||||||||
Corresponding_CDS_history | F36H1.4:wp52 | ||||||||
Corresponding_transcript (11) | |||||||||
Other_sequence | CR09820 | ||||||||
CRC07071_1 | |||||||||
CJC02266_1 | |||||||||
Associated_feature (12) | |||||||||
Experimental_info | RNAi_result (54) | ||||||||
Expr_pattern (16) | |||||||||
Drives_construct (19) | |||||||||
Construct_product (27) | |||||||||
Microarray_results (44) | |||||||||
Expression_cluster (158) | |||||||||
Interaction (299) | |||||||||
WBProcess | WBbiopr:00000020 | ||||||||
WBbiopr:00000044 | |||||||||
WBbiopr:00000067 | |||||||||
WBbiopr:00000070 | |||||||||
WBbiopr:00000071 | |||||||||
Map_info | Map | IV | Position | 4.82027 | Error | 0.004649 | |||
Well_ordered | |||||||||
Positive | Positive_clone | F36H1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
PS#001 | |||||||||
Mapping_data | 2_point | 3296 | |||||||
Multi_point | 117 | ||||||||
382 | |||||||||
383 | |||||||||
603 | |||||||||
678 | |||||||||
774 | |||||||||
1135 | |||||||||
1137 | |||||||||
1276 | |||||||||
1640 | |||||||||
Pos_neg_data (16) | |||||||||
Reference (361) | |||||||||
Remark | Updated sequence connections to take account of splice variants. [02/03/28 krb] | ||||||||
Method | Gene |