WormBase Tree Display for Gene: WBGene00002278
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| WBGene00002278 | SMap | S_parent | Sequence | Y55F3AM | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lep-2 | Person_evidence | WBPerson178 | |||||
| Sequence_name | Y55F3AM.6 | ||||||||
| Molecular_name | Y55F3AM.6a | ||||||||
| Y55F3AM.6a.1 | |||||||||
| CE25488 | |||||||||
| Y55F3AM.6b | |||||||||
| CE33891 | |||||||||
| Y55F3AM.6b.1 | |||||||||
| Other_name | CELE_Y55F3AM.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | lep-2 | ||||||||
| DB_info | Database | NDB | locus_tag | CELE_Y55F3AM.6 | |||||
| Panther | gene | CAEEL|WormBase=WBGene00002278|UniProtKB=Q9N373 | |||||||
| family | PTHR11224 | ||||||||
| NCBI | gene | 176918 | |||||||
| RefSeq | protein | NM_001028339.6 | |||||||
| NM_001028340.6 | |||||||||
| KEGG | KEGG_id | 2.3.2.27 | |||||||
| NemaPath | KEGG_id | 2.3.2.27 | |||||||
| SwissProt | UniProtAcc | Q9N373 | |||||||
| TREEFAM | TREEFAM_ID | TF315108 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N373 | |||||||
| OMIM | gene | 603856 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 27 Jan 2017 11:53:13 | WBPerson2970 | Event | Acquires_merge | WBGene00021924 | ||||
| Acquires_merge | WBGene00021924 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lep | ||||||||
| Allele (140) | |||||||||
| Legacy_information | [C.elegansII] bx73 : mail tail tip protrudes beyond posterior edge of fan, failure of tail tip syncytium retraction. NA1. [DF] | ||||||||
| Strain | WBStrain00031696 | ||||||||
| WBStrain00054733 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP4044 | ||||||||
| Ortholog (52) | |||||||||
| Paralog | WBGene00014772 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||
| Structured_description | Automated_description | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm. Expressed in developing hermaphrodite gonad; hypodermis; neurons; and pharynx. Human ortholog(s) of this gene implicated in central precocious puberty 2. Is an ortholog of several human genes including MKRN1 (makorin ring finger protein 1); MKRN3 (makorin ring finger protein 3); and MKRN4P (makorin ring finger protein 4, pseudogene). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112309 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7114) | ||||
| Molecular_info | Corresponding_CDS | Y55F3AM.6a | |||||||
| Y55F3AM.6b | |||||||||
| Corresponding_transcript | Y55F3AM.6a.1 | ||||||||
| Y55F3AM.6b.1 | |||||||||
| Other_sequence (20) | |||||||||
| Associated_feature | WBsf645777 | ||||||||
| WBsf978624 | |||||||||
| WBsf995314 | |||||||||
| WBsf995315 | |||||||||
| WBsf1016642 | |||||||||
| WBsf227900 | |||||||||
| WBsf227901 | |||||||||
| WBsf227902 | |||||||||
| WBsf227903 | |||||||||
| Transcription_factor | WBTranscriptionFactor001105 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00057532 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00094794 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015826 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037520 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021028 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076826 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12704 | ||||||||
| Expr1027160 | |||||||||
| Expr1039637 | |||||||||
| Expr1160966 | |||||||||
| Expr2013048 | |||||||||
| Expr2031280 | |||||||||
| Drives_construct | WBCnstr00022657 | ||||||||
| Construct_product | WBCnstr00022657 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (75) | |||||||||
| Interaction | WBInteraction000505323 | ||||||||
| WBInteraction000526650 | |||||||||
| WBInteraction000527767 | |||||||||
| WBInteraction000528073 | |||||||||
| WBInteraction000549123 | |||||||||
| WBInteraction000559648 | |||||||||
| WBInteraction000560390 | |||||||||
| WBInteraction000582668 | |||||||||
| Map_info | Map | IV | Position | -22.7898 | |||||
| Positive | Positive_clone | Y55F3AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
