WormBase Tree Display for Gene: WBGene00002269
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| WBGene00002269 | SMap | S_parent | Sequence | Y55B1AR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | lec-6 | |||||||
| Sequence_name | Y55B1AR.1 | ||||||||
| Molecular_name | Y55B1AR.1 | ||||||||
| Y55B1AR.1.1 | |||||||||
| CE22493 | |||||||||
| Other_name | CELE_Y55B1AR.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | lec-6 | ||||||||
| DB_info | Database | AceView | gene | 3B218 | |||||
| WormQTL | gene | WBGene00002269 | |||||||
| WormFlux | gene | WBGene00002269 | |||||||
| NDB | locus_tag | CELE_Y55B1AR.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002269|UniProtKB=Q9N384 | |||||||
| family | PTHR11346 | ||||||||
| NCBI | gene | 175212 | |||||||
| RefSeq | protein | NM_064814.8 | |||||||
| TrEMBL | UniProtAcc | Q9N384 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N384 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lec | ||||||||
| Allele (21) | |||||||||
| Legacy_information | [Arata Y] No mutants known. Encodes predicted galectin, 16 kDa. mment: Not located on physical or sequence map, 02/98 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00093599 | ||||||||
| 00093600 | |||||||||
| 00093601 | |||||||||
| 00093602 | |||||||||
| 00110341 | |||||||||
| Ortholog (48) | |||||||||
| Paralog (26) | |||||||||
| Structured_description | Concise_description | lec-6 encodes a 'proto' type galectin (beta-galactosyl-binding lectin) containing a single carbohydrate recognition domain; by homology, LEC-6 may play roles in cell adhesion and aggregation, proliferation, or programmed cell death, but as loss of lec-6 activity via large-scale RNAi screens does not result in obvious abnormalities, the precise role of LEC-6 in C. elegans development and/or behavior is not yet known; in vitro, LEC-6 can interact with several types of blood group precursor oligosaccharides and gangliosides. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005049 | |||||||||
| WBPaper00005415 | |||||||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable galactoside binding activity. Located in cytoplasm. Expressed in intestine and pharynx. Is an ortholog of human LGALS7 (galectin 7) and LGALS7B (galectin 7B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y55B1AR.1 | |||||||
| Corresponding_transcript | Y55B1AR.1.1 | ||||||||
| Other_sequence | CBC03311_1 | ||||||||
| AE01480 | |||||||||
| AYC00235_1 | |||||||||
| Acan_isotig14923 | |||||||||
| CB043692.1 | |||||||||
| FC540345.1 | |||||||||
| CR00316 | |||||||||
| CRC03313_1 | |||||||||
| CJC03326_1 | |||||||||
| ES672567.1 | |||||||||
| Associated_feature | WBsf650801 | ||||||||
| WBsf650802 | |||||||||
| WBsf650803 | |||||||||
| WBsf981391 | |||||||||
| WBsf226110 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00021003 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00110600 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033545 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057496 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021005 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062454 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007108 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061941 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4098 | ||||||||
| Expr9172 | |||||||||
| Expr9174 | |||||||||
| Expr1011230 | |||||||||
| Expr1160934 | |||||||||
| Expr2013039 | |||||||||
| Expr2031271 | |||||||||
| Drives_construct | WBCnstr00013768 | ||||||||
| Construct_product | WBCnstr00013768 | ||||||||
| Regulate_expr_cluster | WBPaper00039838:LEC-6_binding_protein | ||||||||
| Antibody | WBAntibody00002214 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (300) | |||||||||
| Interaction (33) | |||||||||
| Map_info | Map | III | Position | -26.58 | Error | 0.056803 | |||
| Positive | Positive_clone | Y55B1AR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (24) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
