WormBase Tree Display for Gene: WBGene00002267

WBGene00002267 SMap: S_parent: Sequence: C44F1
  Identity: Version: 1
    Name: CGC_name: lec-4
      Sequence_name: C44F1.3
      Molecular_name: C44F1.3
        C44F1.3.1
        CE02163
      Other_name: CELE_C44F1.3 Accession_evidence: NDB BX284603
      Public_name: lec-4
    DB_info: Database: AceView gene 3E862
        WormQTL gene WBGene00002267
        WormFlux gene WBGene00002267
        NDB locus_tag CELE_C44F1.3
        Panther gene CAEEL|WormBase=WBGene00002267|UniProtKB=Q18625
          family PTHR11346
        NCBI gene 175488
        RefSeq protein NM_065362.9
        TrEMBL UniProtAcc Q18625
        UniProt_GCRP UniProtAcc Q18625
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:27 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lec
    Allele (34)
    Legacy_information: [Arata Y] No mutants known. Encodes predicted galectin. Predicted gene C44F1.3
    RNASeq_FPKM (74)
    GO_annotation: 00061868
      00061869
      00061870
      00061871
      00061872
      00110339
    Ortholog: WBGene00054801 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00030849 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00151467 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00092167 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
      WBGene00120300 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00223028 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5720 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g710 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g10970 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g22276 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g16272 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g22453 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6404 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7127 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18079 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8188 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00013.g942 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-lec-4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold552.g3657 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00014.g905 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_10251 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009738 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12618 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g13067 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30226400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7315 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00207210 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00218605 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00240064 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00290216 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301846 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0034365 Drosophila melanogaster From_analysis: Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-040718-159 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-030131-9543 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-060312-19 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-040724-22 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-070822-22 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-131119-90 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:6570 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            Panther
            SonicParanoid
      HGNC:24842 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            Panther
            SonicParanoid
      MGI:109496 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      RGD:3005 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
    Paralog (28)
    Structured_description: Concise_description: lec-4 encodes a predicted galectin that exhibits sugar binding properties in vitro. Paper_evidence: WBPaper00004274
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enables galactoside binding activity. Located in membrane raft. Is an ortholog of human LGALS9 (galectin 9) and LGALS9B (galectin 9B). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C44F1.3
    Corresponding_transcript: C44F1.3.1
    Other_sequence (192)
    Associated_feature: WBsf650931
      WBsf991899
      WBsf991900
      WBsf991901
      WBsf1014631
      WBsf1014632
      WBsf226390
      WBsf226391
      WBsf226392
  Experimental_info: RNAi_result: WBRNAi00011953 Inferred_automatically: RNAi_primary
      WBRNAi00042492 Inferred_automatically: RNAi_primary
      WBRNAi00006002 Inferred_automatically: RNAi_primary
      WBRNAi00092920 Inferred_automatically: RNAi_primary
      WBRNAi00029813 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025418
      Expr1146479
      Expr2013037
      Expr2031269
    Drives_construct: WBCnstr00036345
    Construct_product: WBCnstr00036345
    Microarray_results (19)
    Expression_cluster (213)
    Interaction: WBInteraction000538828
      WBInteraction000540312
      WBInteraction000552309
      WBInteraction000552501
      WBInteraction000560845
      WBInteraction000561989
      WBInteraction000564012
      WBInteraction000567096
      WBInteraction000568248
  Map_info: Map: III Position: -4.25302 Error: 0.000245
    Positive: Positive_clone: C44F1 Person_evidence: WBPerson763
          Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004274
    WBPaper00032075
    WBPaper00034766
    WBPaper00037777
    WBPaper00038491
    WBPaper00055090
    WBPaper00061547
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene