WormBase Tree Display for Gene: WBGene00002241
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WBGene00002241 | SMap | S_parent | Sequence | F10C2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | kup-1 | Person_evidence | WBPerson71 | |||||
Sequence_name | F10C2.2 | ||||||||
Molecular_name | F10C2.2 | ||||||||
F10C2.2.1 | |||||||||
CE09306 | |||||||||
Other_name (2) | |||||||||
Public_name | kup-1 | ||||||||
DB_info | Database | AceView | gene | 5M514 | |||||
WormQTL | gene | WBGene00002241 | |||||||
WormFlux | gene | WBGene00002241 | |||||||
NDB | locus_tag | CELE_F10C2.2 | |||||||
NCBI | gene | 179651 | |||||||
RefSeq | protein | NM_001392622.1 | |||||||
SwissProt | UniProtAcc | P34705 | |||||||
UniProt_GCRP | UniProtAcc | P34705 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | kup | ||||||||
Allele (99) | |||||||||
Legacy_information | [C.elegansII] NMK. Upstream in operon with kin-13. Encodes predicted 385 aa novel protein. Antibody stains nuclei of most cells. [Zorio et al. 1994; CR] | ||||||||
Strain | WBStrain00035751 | ||||||||
RNASeq_FPKM (74) | |||||||||
Contained_in_operon | CEOP5312 | ||||||||
Ortholog (27) | |||||||||
Structured_description | Concise_description | kup-1 encodes a novel protein that is conserved in C. briggsae, but contains no other known homologs; kup-1 is the upstream gene in an operon with pkc-1, which encodes two protein kinase C isoforms of the nPKC isotype; the polycistronic kup-1/pkc-1 mRNA is detected at low levels in embryos and larvae, but its expression greatly increases in adults; as loss of kup-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of kup-1 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00001950 | |||||
WBPaper00005493 | |||||||||
WBPaper00005654 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including AVK; MSaapaapa; accessory cell; anterior arcade cell; and g2 based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; glp-1; and gld-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by thirteen chemicals including rotenone; mianserin; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F10C2.2 | |||||||
Corresponding_transcript | F10C2.2.1 | ||||||||
Other_sequence (42) | |||||||||
Associated_feature (30) | |||||||||
Experimental_info | RNAi_result | WBRNAi00044221 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00013038 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00085043 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr12857 | ||||||||
Expr1021564 | |||||||||
Expr1031316 | |||||||||
Expr1148182 | |||||||||
Expr2012983 | |||||||||
Expr2031215 | |||||||||
Drives_construct | WBCnstr00022908 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (139) | |||||||||
Interaction | WBInteraction000227835 | ||||||||
WBInteraction000396019 | |||||||||
WBInteraction000435475 | |||||||||
WBInteraction000574965 | |||||||||
WBInteraction000576308 | |||||||||
Map_info | Map | V | Position | 3.60848 | Error | 0.003861 | |||
Positive | Positive_clone | F10C2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4470 | |||||||
4586 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00001723 | ||||||||
WBPaper00002006 | |||||||||
WBPaper00005493 | |||||||||
WBPaper00010944 | |||||||||
WBPaper00015440 | |||||||||
WBPaper00022096 | |||||||||
WBPaper00031335 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |