WormBase Tree Display for Gene: WBGene00002169
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| WBGene00002169 | SMap | S_parent | Sequence | F37A4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | isw-1 | Person_evidence | WBPerson268 | |||||
| Sequence_name | F37A4.8 | ||||||||
| Molecular_name | F37A4.8 | ||||||||
| F37A4.8.1 | |||||||||
| CE29792 | |||||||||
| Other_name | CELE_F37A4.8 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | isw-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | isw | ||||||||
| Allele (86) | |||||||||
| Strain | WBStrain00001166 | ||||||||
| WBStrain00027433 | |||||||||
| WBStrain00027531 | |||||||||
| WBStrain00027538 | |||||||||
| WBStrain00036674 | |||||||||
| WBStrain00030050 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (50) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | isw-1 encodes a chromatin remodeling protein containing an AT-hook, two SANT domains, a DEXD/H box, and an ATPase domain that is the C. elegans ortholog of Drosophila ISWI, human SNF2H, and Saccharomyces cerevisiae ISW2; ISW-1 likely acts as the ATPase component of a Nucleosome Remodeling Factor (NURF)-like complex also containing NURF-1 that antagonizes the action of synMuv (synthetic Multivulva) genes in regulating vulval cell fate specification and ISW-1 and NURF-1 appear also to act redundantly with other genes to promote Ras pathway activity during vulval development; reduction-of-function mutations in isw-1 also suppress several non-vulval abnormalities of class B synMuv mutants, including defects in the germline-versus-soma cell-fate decision and a larval arrest phenotype; ISW-1 is a widely expressed nuclear protein that associates with chromatin. | Paper_evidence | WBPaper00027681 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 31 Aug 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATP-dependent activity, acting on DNA and DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II and positive regulation of vulval development. Part of chromatin. Expressed in several structures, including head. Is an ortholog of human SMARCA1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F37A4.8 | |||||||
| Corresponding_transcript | F37A4.8.1 | ||||||||
| Other_sequence | EX555742.1 | ||||||||
| JI216622.1 | |||||||||
| CRC12412_1 | |||||||||
| BUC01698_1 | |||||||||
| Oden_isotig02094 | |||||||||
| Hbac_isotig02164 | |||||||||
| SSC05994_1 | |||||||||
| Oden_isotig02099 | |||||||||
| MH03920 | |||||||||
| BMC08889_1 | |||||||||
| Tcol_isotig04768 | |||||||||
| Tcol_isotig04770 | |||||||||
| NB08409 | |||||||||
| ACC13805_1 | |||||||||
| PPC14169_1 | |||||||||
| ACC29441_1 | |||||||||
| JI472491.1 | |||||||||
| Tcol_isotig04769 | |||||||||
| FC548268.1 | |||||||||
| Dviv_isotig08429 | |||||||||
| ACC09995_1 | |||||||||
| Oden_isotig02097 | |||||||||
| Oden_isotig02095 | |||||||||
| CJC15748_1 | |||||||||
| Acan_isotig16594 | |||||||||
| PPC02938_1 | |||||||||
| FK802785.1 | |||||||||
| NBC00776_1 | |||||||||
| AW313072.1 | |||||||||
| Dviv_isotig08431 | |||||||||
| MIC04560_1 | |||||||||
| EX540091.1 | |||||||||
| ACC10417_1 | |||||||||
| EX560520.1 | |||||||||
| Oden_isotig02100 | |||||||||
| MI05253 | |||||||||
| Tcir_isotig07758 | |||||||||
| MHC10379_1 | |||||||||
| Tcir_isotig14890 | |||||||||
| EX557593.1 | |||||||||
| MCC00005_1 | |||||||||
| Oden_isotig02093 | |||||||||
| HC00474 | |||||||||
| EY460049.1 | |||||||||
| OVC03600_1 | |||||||||
| OOC02183_1 | |||||||||
| ACC08418_1 | |||||||||
| HCC01887_1 | |||||||||
| MC01276 | |||||||||
| Oden_isotig02092 | |||||||||
| EX562172.1 | |||||||||
| Oden_isotig02096 | |||||||||
| EX541309.1 | |||||||||
| EX557095.1 | |||||||||
| GE625544.1 | |||||||||
| Name_isotig03607 | |||||||||
| MA01223 | |||||||||
| EX565140.1 | |||||||||
| HC00004 | |||||||||
| Dviv_isotig08427 | |||||||||
| MH03919 | |||||||||
| JI164616.1 | |||||||||
| CRC00526_1 | |||||||||
| SS02031 | |||||||||
| GR977377.1 | |||||||||
| JI464731.1 | |||||||||
| Oden_isotig02101 | |||||||||
| CR01268 | |||||||||
| MHC00735_1 | |||||||||
| EX548326.1 | |||||||||
| EX565891.1 | |||||||||
| CBC03929_1 | |||||||||
| FD516969.1 | |||||||||
| JI475610.1 | |||||||||
| CSC01354_1 | |||||||||
| SC01184 | |||||||||
| Dviv_isotig34023 | |||||||||
| Name_isotig08393 | |||||||||
| HCC01887_2 | |||||||||
| Oden_isotig02102 | |||||||||
| CR01684 | |||||||||
| MA02890 | |||||||||
| Dviv_isotig08430 | |||||||||
| Acan_isotig08106 | |||||||||
| Oden_isotig02103 | |||||||||
| MAC00533_1 | |||||||||
| Oden_isotig02098 | |||||||||
| EX564548.1 | |||||||||
| JI466861.1 | |||||||||
| HC01941 | |||||||||
| MAC02821_1 | |||||||||
| EX540583.1 | |||||||||
| EX546563.1 | |||||||||
| Oden_isotig02104 | |||||||||
| Dviv_isotig08428 | |||||||||
| CRC10185_1 | |||||||||
| EX543171.1 | |||||||||
| Associated_feature | WBsf651136 | ||||||||
| WBsf667017 | |||||||||
| WBsf667018 | |||||||||
| WBsf226864 | |||||||||
| WBsf226865 | |||||||||
| Transcription_factor | WBTranscriptionFactor001001 | ||||||||
| Experimental_info | RNAi_result (79) | ||||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00001283 | ||||||||
| WBCnstr00002058 | |||||||||
| WBCnstr00015266 | |||||||||
| WBCnstr00036411 | |||||||||
| WBCnstr00039318 | |||||||||
| Construct_product | WBCnstr00016570 | ||||||||
| WBCnstr00036411 | |||||||||
| WBCnstr00039318 | |||||||||
| Antibody | WBAntibody00001099 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (147) | |||||||||
| Interaction (358) | |||||||||
| Map_info | Map | III | Position | -0.994995 | Error | 0.006556 | |||
| Positive | Positive_clone | F37A4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (25) | |||||||||
| Remark | Sequence connection from Andersen EC and Horvitz HR [021008 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
