WormBase Tree Display for Gene: WBGene00002133
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| WBGene00002133 | SMap | S_parent | Sequence | W04D2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | inx-11 | Person_evidence | WBPerson247 | |||||
| Sequence_name | W04D2.3 | ||||||||
| Molecular_name | W04D2.3a | ||||||||
| W04D2.3a.1 | |||||||||
| CE06538 | |||||||||
| W04D2.3b | |||||||||
| CE53090 | |||||||||
| W04D2.3b.1 | |||||||||
| Other_name | opu-11 | ||||||||
| CELE_W04D2.3 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | inx-11 | ||||||||
| DB_info | Database | AceView | gene | 5M971 | |||||
| WormQTL | gene | WBGene00002133 | |||||||
| WormFlux | gene | WBGene00002133 | |||||||
| NDB | locus_tag | CELE_W04D2.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002133|UniProtKB=Q23157 | |||||||
| family | PTHR11893 | ||||||||
| NCBI | gene | 179710 | |||||||
| RefSeq | protein | NM_001373129.3 | |||||||
| NM_001269497.3 | |||||||||
| SwissProt | UniProtAcc | Q23157 | |||||||
| TrEMBL | UniProtAcc | C9IY29 | |||||||
| UniProt_GCRP | UniProtAcc | Q23157 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | inx | ||||||||
| Allele (91) | |||||||||
| Legacy_information | [Barnes TM] opu for OPUS protein. Predicted gene W04D2. | ||||||||
| Strain | WBStrain00032791 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Ortholog (43) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Concise_description | inx-11 encodes a predicted member of the innexin family; expressed in the pharynx, a few head neurons, the tail hypodermis, posterior intestine and in some vulval and uterine muscles. | Paper_evidence | WBPaper00005286 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable gap junction hemi-channel activity. Predicted to be involved in monoatomic ion transmembrane transport. Located in gap junction. Expressed in several structures, including egg-laying apparatus; epithelial cell; pharynx; spermatocyte; and tail neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W04D2.3a | |||||||
| W04D2.3b | |||||||||
| Corresponding_CDS_history | W04D2.3b:wp270 | ||||||||
| Corresponding_transcript | W04D2.3a.1 | ||||||||
| W04D2.3b.1 | |||||||||
| Other_sequence | HGC00298_1 | ||||||||
| Acan_isotig04290 | |||||||||
| HG11362 | |||||||||
| BUC01661_1 | |||||||||
| CJC05782_1 | |||||||||
| Dviv_isotig24206 | |||||||||
| Oden_isotig22470 | |||||||||
| Associated_feature | WBsf647379 | ||||||||
| WBsf661031 | |||||||||
| WBsf661905 | |||||||||
| WBsf1001597 | |||||||||
| WBsf1001598 | |||||||||
| WBsf1020585 | |||||||||
| WBsf232659 | |||||||||
| WBsf232660 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00026485 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019590 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054768 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036272 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107716 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107717 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009251 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071581 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1954 | ||||||||
| Expr8679 | |||||||||
| Expr11345 | |||||||||
| Expr11356 | |||||||||
| Expr1025411 | |||||||||
| Expr1031249 | |||||||||
| Expr1158304 | |||||||||
| Expr2012785 | |||||||||
| Expr2031024 | |||||||||
| Drives_construct | WBCnstr00010545 | ||||||||
| WBCnstr00013446 | |||||||||
| WBCnstr00016947 | |||||||||
| WBCnstr00018788 | |||||||||
| WBCnstr00036427 | |||||||||
| Construct_product | WBCnstr00018799 | ||||||||
| WBCnstr00036427 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (94) | |||||||||
| Map_info | Map | V | Position | 4.38011 | Error | 0.012504 | |||
| Positive | Positive_clone | W04D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002950 | ||||||||
| WBPaper00005286 | |||||||||
| WBPaper00028502 | |||||||||
| WBPaper00034603 | |||||||||
| WBPaper00043411 | |||||||||
| WBPaper00044311 | |||||||||
| WBPaper00061401 | |||||||||
| WBPaper00065757 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
